BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06020.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928221 jgi|Araly1|928221|scaffold_300678.1 1277 0.0
> Ahg928221 jgi|Araly1|928221|scaffold_300678.1
Length=941
Score = 1277 bits (691), Expect = 0.0
Identities = 847/917 (92%), Gaps = 31/917 (3%)
Strand=Plus/Plus
Query 1 ATGGCAACTGTTGTATATCAATCTTATTTTGAGTCTCAACACTTTGAGCCAAGAGCTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCAACTGTTGTATATCAATCTTATTTTGAGTCTCAACACTTTGAGCCAAGAGCTCTC 80
Query 61 AGACTCAGACTCTCTTCTCATACAAATCCTCAAC-TATCCACACCTCTCAAATCCCATTT 119
||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 81 AGACTCAGACTTTCTTCTCATACAAATCCTC-ACTTATCCACACCTCTTAAATCCCATTT 139
Query 120 CCAAAATTCTTCCATTGCTCCACAAGACAACCCTATTACCATTAATGCAGCCTCCTTGCC 179
|||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 140 CCAAGATTCTTCCATTGCTCCACAAGACAACACTACTACCATTAATGCAGCCTCCTTGTC 199
Query 180 CTCATCAAGTCCCAA-CCCGAGCTCTAACTCGGACACCAACTCGGGAAGTTGGAGCTTCC 238
|| |||| ||||||| |||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 200 CTTATCAGGTCCCAACCCCG-GCTCTAACTCGGACTCTAACTCGGGAAGTTGGAGCTTCC 258
Query 239 TCGAGTCCCTTTCAAACTCGAGCTCTAATGATAAAGAGAAGAAGACATTACCACTCTTTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 259 TCGAGTCCCTTTCAAACTCGAGCTCTAATGATAAAGAGAAGAAGACATTATCACTATTTC 318
Query 299 AATCTCCATCCT-CTCGTAGAACTCTCAGCGACGAGAGCTTAGCATTGTGCACTGAGAGC 357
| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 AGTCTCCATC-TGCTCGTAGAACTCTCAGCGATGAGAGCTTAGCATTGTGCACTGAGAGC 377
Query 358 CTTGGGAGCGAGACGGGCTCTGATATCATTCATGAAGAT-A---T--GTTCTCGATTTCA 411
|| ||||||||||| |||||||||||||||||||||||| | | ||| |||||||||
Sbjct 378 CTCGGGAGCGAGACCGGCTCTGATATCATTCATGAAGATGAAGATATGTTTTCGATTTCA 437
Query 412 TCTGAATTACAAACTATGGAAACTAGAACCACGTCGACAACATCGAAT-CCATCAAGACA 470
|||||||||||||| |||||||||||||| ||||||| |||||| || |||||| ||||
Sbjct 438 TCTGAATTACAAACCATGGAAACTAGAACTACGTCGATAACATC-AAGGCCATCACGACA 496
Query 471 AGATAGGAAGAGGAATACA-ATGGCTTCACTTCCACCTCCTTTGACAAGTATGATAGGTT 529
||||| ||||||||||| | |||||||||||||||||||||||| ||||||||| |||||
Sbjct 497 AGATATGAAGAGGAATA-AGATGGCTTCACTTCCACCTCCTTTGGCAAGTATGAGAGGTT 555
Query 530 TTGATTGCATTGAAGTCAAGTCGCACCGTGAAAACGGAAGATTAGTAATGATGGCCACGA 589
|||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||| |
Sbjct 556 TTGATTGCATTGAAGTCAAGTCACACCGTGAAAATGGAAGATTGGTAATGACGGCCACAA 615
Query 590 GACCTCCTCCGCGTAATCGTTGCCTTCAGGACCGAAGCAATGGCTGTGTCAGACTCGCTA 649
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 616 GACCTCCTCCGCGTAATCGTTGCCTTCAGGACCGAAGCAATGGCTGTGTAAGACTCGCTA 675
Query 650 TCTTGATTGATTCTGATGACCACATagagacagagaccaaagaagaaaaagaagaagaag 709
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 676 TCTTGATTGATTCTGATGACCACATCGAGACAGAGACCAAAGAAGAA---GAAGAAGA-G 731
Query 710 aggaagaaacaatcgagaccgtgagagataacgaagaagagattccagaatacaaggaag 769
| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 732 A--------CAATCGAGACCGTGAGAAATACCGAAGAAGAGATTCCAGAATACGAGGAAG 783
Query 770 aag---aagaagaaaaagaagaagaaatcaaagtaaagggtgttgagaaagttcaaagat 826
||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 784 AAGTTGAAGAAAAAAAAGAAGAAGAAATCAAAGTAAAGAGTGTTGAGAAAGTACAAAGAT 843
Query 827 caagaagaTGTATTGAAGGAGATCGAGAAAACAGAGGATTTCTAAATTGGGAATCTTTAT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CAAGAAGATGTATTGAAGGAGATCGAGAAAACAGAGGATTTCTAAATTGGGAATCTTTAT 903
Query 887 GTGTTGCCACTTCCTAA 903
|| ||||||||||||||
Sbjct 904 GTTTTGCCACTTCCTAA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5