BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06030.1
Length=2246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317466 jgi|Araly1|317466|fgenesh1_pm.C_scaffold_3000482 3144 0.0
Ahg952122 jgi|Araly1|952122|scaffold_38400001.1 108 2e-22
> Ahg317466 jgi|Araly1|317466|fgenesh1_pm.C_scaffold_3000482
Length=1971
Score = 3144 bits (1702), Expect = 0.0
Identities = 1887/1976 (95%), Gaps = 14/1976 (1%)
Strand=Plus/Plus
Query 136 ATGCAGGATATTCTCGGATCGGTTCGCCGATCCTTGGTTTTCCGGTCGTCTTTGGCCGGA 195
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGCAGGATATTCTCGGATCGGTTCGCCGATCCTTGGTTTTTCGGTCGTCTTTTGCCGGA 60
Query 196 GACGATGGTACTAGCGGCGGAGGTCTTAGCGGATTCGTCGGGAAGATTAACTCTAGTATC 255
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 61 GACGATGGTAGTAGCGGCGGAGGTCTAAGCGCATTCGTCGGGAAGATTAACTCTAGTATT 120
Query 256 CGTAGCTCTCGAATTGGGCTCTTTTCTAAGCCGCCTCCAGGCCTTCCTGCTCCTAGAAAA 315
||||||||||| || || |||||| | |||||||||||||||||||||||||||||||||
Sbjct 121 CGTAGCTCTCGTATAGGCCTCTTTACCAAGCCGCCTCCAGGCCTTCCTGCTCCTAGAAAA 180
Query 316 GAAGAAGCGCCGTCGATTCGGTGGAGGAAAGGGGAATTAATCGGTTGCGGTGCTTTTGGA 375
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGAAGCGTCGTCGATTCGGTGGAGGAAAGGGGAATTAATCGGTTGCGGTGCTTTTGGG 240
Query 376 AGAGTTTACATGGGAATGAACCTCGATTCCGGCGAGCTTCTTGCAATTAAACAGGTTTTA 435
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGGTTTACATGGGAATGAATCTCGATTCCGGCGAGCTTCTTGCAATTAAACAGGTTTTA 300
Query 436 ATCGCTCCAAGCAGTGCTTCAAAGGAGAAGACTCAGGGTCACATCCGAGAGCTTGAGGAA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCGCTCCAAGCAGTGCTTCAAAGGAGAAGACTCAGGGTCACATCCGAGAGCTTGAGGAA 360
Query 496 GAAGTACAACTTCTTAAGAATCTTTCACATCCGAACATCGTTAGATACTTGGGTACTGTA 555
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 361 GAAGTACAACTTCTTAAGAATCTTTCACATCCAAACATTGTTAGATACTTGGGTACTGTA 420
Query 556 AGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATATCATCT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATATCATCT 480
Query 616 TTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCTGTGATTATTATGTACACAAAGCAACT- 674
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 481 TTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCAGTGATAATAATGTACACAAAGCAGCTG 540
Query 675 TCTGCTTGGTCTGGAATATCTTCACAACAATGGGATCATGCATCGAGATATTAAGGGGGC 734
| |||| ||| |||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 541 T-TGCTGGGTTTGGAGTATCTTCACAACAATGGGATTATGCATAGAGATATTAAGGGGGC 599
Query 735 AAATATTTTGGTCGATAACAAAGGTTGCATCAGACTCGCAGATTTTGGTGCTTCCAAGAA 794
|||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 600 AAATATTTTGGTTGATAACAAAGGGTGCACCAGGCTCGCAGATTTTGGTGCTTCCAAGAA 659
Query 795 AGTTGTAGAGCTAGCTACTGTAAATGGTGCCAAATCTATGAAGGGGACGCCTTATTGGAT 854
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 AGTTGTAGAGCTAGCTACTGTAAATGGTGCCAAATCTATGAAGGGAACGCCTTATTGGAT 719
Query 855 GGCTCCTGAAGTCATTCTCCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGTGTTGG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCTCCTGAAGTCATTCTCCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGTGTTGG 779
Query 915 GTGCACTGTGATTGAGATGGCTACGGGGAAGCCTCCCTGGAGCGAGCAGTATCAGCAGTT 974
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GTGTACTGTGATTGAGATGGCTACAGGGAAGCCTCCCTGGAGCGAGCAGTATCAGCAGTT 839
Query 975 TGCTGCTGTCCTTCATATTGGTAGAACAAAAGCTCATCCTCCAATTCCAGAAGACCTCTC 1034
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCTGCTGTACTTCATATTGGTAGAACAAAAGCTCATCCTCCAATTCCAGAAGACCTCTC 899
Query 1035 ACCAGAGGCTAAAGACTTTCTAATGAAATGCTTACACAAAGAACCAAGCTTGAGACTCTC 1094
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCAGAGGCTAAAGACTTTCTTTTGAAATGCTTACACAAAGAACCAAGCTTGAGACTCTC 959
Query 1095 TGCAACCGAATTGCTTCAGCACCCGTTTGTCACTGGAAAGCGCCAGGAA-C-CTTATCCA 1152
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 960 TGCAACCGAATTGCTTCAGCACCCGTTTGTCACTGGAAAGCGCCAGGAATCTCTT-TC-A 1017
Query 1153 GCTTACCGTAATTCT-CTTACGGAATGTGGAAACCCAATAACTACTCAAGGAATGAATGT 1211
||||||||||||| | ||||||||||| || |||||||||||||| |||||| |||||||
Sbjct 1018 GCTTACCGTAATT-TACTTACGGAATGCGGGAACCCAATAACTACACAAGGAGTGAATGT 1076
Query 1212 TCGGAGTTCAATAAATTCGTTGATCAGGAGGTCGACATGTTCAGGCTTGAAGGATGTCTG 1271
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1077 TAGGAGTTCAATAAATTCGTTGATCAGGAGGTCAACCTGTTCAGGCTTGAAGGATGTCTG 1136
Query 1272 TGAACTGGGAAGCTTGAGGAGTTCCATTATATACCCACAGAAGTCAAATAACTCAGGATT 1331
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1137 TGAACTGGGAAGCTTGAGGAGTTCCATTATATACCCATAGAAGTCAAATAATTCAGGATT 1196
Query 1332 TGGTTGGCGAGATGGAGACTCTGATGACCTTTGTCAGACCGATATGGATGATCTCTGCAA 1391
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CGGTTGGCGAGATGGAGACTCTGATGACCTTTGTCAGACCGACATGGATGATCTCTGCAA 1256
Query 1392 CATTGAATCAGTCAGAAACAATGTTTTGTCACAGTCCACCGATTTAAACAAGAGTTTTAA 1451
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 CATTGAATCAGTCAGAAATAATGTTTTGTCACAATCCACCGATTTAAACAAGAGTTTTAA 1316
Query 1452 TCCCATGTGTGATTCCACGGATAACTGGTCTTGCAAGTTTGATGAAAGCCCAAAAGTGAT 1511
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1317 TCCCATGTGTGATTCAACGGATAACTGGTCTTGCAAGTTTGATGAAAGCCCAGAAGTGAT 1376
Query 1512 GAAAAGCAAATCTAACCTGCTTTCTTACCAAGCTTCTCAACTCCAAACTGGAGTTCCATG 1571
|||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||
Sbjct 1377 GAAAAGCAAATCTAACCTGCTTTCTTACCAAGCTGCTGAACTCAAAACTGGGGTTCCATG 1436
Query 1572 TGATGAGGAAACCAGCTTAACATTTGCTGGTGGCTCTTCCGTTGCAGAGGATGATTATAA 1631
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1437 TGATGAGGAAACCAACTTAACATTTGCTGGTGGCTCTTCCGTTGCAGAGGACGATTATAA 1496
Query 1632 AGGCA-CAGAGTTGAAAATAAAATCATTTTTGGATGAGAAGGCTCAGGATTTGAAAAGGT 1690
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AG-CAACAGAGTTGAAAATAAAATCATTTTTGGATGAGAAGGCTCAGGATTTGAAAAGGT 1555
Query 1691 TGCAGACCCCTCTGCTTGAAGAATTCCACAATGCTATGAATCCAGGAATACCCCAAGGTG 1750
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1556 TGCAGACCCCTCTGCTTGAAGAATTCCACAATGCTATGAATCCAGGAACACCACAAAGTG 1615
Query 1751 CACTTGGAGACACCAATATCTACAATTTACCAAACTTACCAAGTATAAGCAAGACACCTA 1810
|||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1616 CACTTGGAGACACCAATAGCTACAATTTACCAAACCTACCAACTATAAGCAAGTCACCTA 1675
Query 1811 AACGACTTCCGAGTAGACGACTCTCAGCAATCAGTGATGCTATGCCCAGCCCACTCAAAA 1870
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1676 AACGACTTCCGAGTAGACGACTCTCAGCAATCAGTGATGCTATGCCTAGCCCGCTCAAAA 1735
Query 1871 GCTCCAAACGTACACTGAACACAAGCAGAGTGATGCAGTCAGGAACTGAACCAACTCAAG 1930
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1736 GCTCCAAACGTACACTGAACACAAGCAGAGTGATGCAGCCAGGAACTGAACCAACTCAAG 1795
Query 1931 TCAACGAGTCGACCAAGAAGGGAGTAAATAATAGCCGTTGTTTCTCAGAGATACGTCGGA 1990
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1796 TCAATGAGTCGACCAAGAAGGGAGTAACTAATAGCCGTTGTTTTTCAGAGATACGTCGGA 1855
Query 1991 AGTGGGAAGAAGAACTCTATGAAGAGCTTGAGAGGCATCGAG--A--GAATCTGCGACAC 2046
| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1856 AATGGGAAGAAGAACTCTATGAAGAACTTGAGAGGCATCGAGGCAAAGAATCTGCGACAT 1915
Query 2047 GCTGGTGCAGGAGGGAAGACTCCATTATCAGGCCACAAAGGATAGTGAACGGCTAA 2102
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1916 GCTGGTGCAGGAGGGAAGACTCCATTGTCAGCCCACAAAGGATAGTGAACGGCTAA 1971
> Ahg952122 jgi|Araly1|952122|scaffold_38400001.1
Length=736
Score = 108 bits (58), Expect = 2e-22
Identities = 64/67 (96%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1261 AAGGATGTCTGTGAACTGGGAAGCTTGAGGAGTTCCATTATATACCCACAGAAGTCAAAT 1320
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 57 AAGGATGTCTGTGAACTGGTAAGCTTGAGGAGTTTCAATATATACCCACAGAAGTCAAAT 116
Query 1321 AACTCAG 1327
|||||||
Sbjct 117 AACTCAG 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84560343900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5