BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06035.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477902 jgi|Araly1|477902|fgenesh2_kg.3__603__AT3G06035.1 1129 0.0
> Ahg477902 jgi|Araly1|477902|fgenesh2_kg.3__603__AT3G06035.1
Length=783
Score = 1129 bits (611), Expect = 0.0
Identities = 731/788 (93%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 1 CTTTATGAGTAAAAGCGAAGTAACCATTTCTCTCACTCTCCTTTCTCAATTAATATAAGC 60
||||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1 CTTTAAGAGTAAAAGCTAAGTAACCATTTCTCTCACTCTCCTTTATCAACAAATATAAGC 60
Query 61 CAATCACC-ATCAAAATATCATTTGAGAACTCTAGAAACCTGCTTCAATGGCGA-TCGAC 118
|||||||| | |||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 61 CAATCACCAAAAAAAATATCATTTGAGAACTCTAGAAACCTGTTTCAATGGCGATTC-AC 119
Query 119 AAGCTTCCACTTCTTCTCTTTCTCTCCATACTCCTCTGCCTCAATCGCCCTGTTCTTAGC 178
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 120 AAGCTTCCACTTCTTCTCTTTCTCTCCATCCTCCTCTTCCTCAATCGCCCCGTTCTTAGC 179
Query 179 GACACCGATGAAGAGGACATTCTTCTCACAGGAATCAACAGCTACAGAACAACACAGAAT 238
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACACCGATGAAGAGGCCATTCTTCTCACAGGAATCAACAGCTACAGAACAACACAGAAT 239
Query 239 CTAACAATCTTAAGCAAGAACGAAAACGCAGAATGCCTAGCTGACGAAATCGCAGACCAA 298
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 CTAACAACCTTAAGCAAGAACGAAAACGCAGAATGTCTAGCTGACGAAATCGCAGACCAA 299
Query 299 TTCAAGAACAAACCTTGTACCAACGACACTGGCTCAGCCACAGTACCTGGAACTGAGCCA 358
||||||||||||||||| || | ||||||||| ||||||||||| |||||||| ||||||
Sbjct 300 TTCAAGAACAAACCTTGCACTAGCGACACTGGTTCAGCCACAGTTCCTGGAACCGAGCCA 359
Query 359 CAGTTCGCAAACTACCCTCAGATTCTAGCAAAATGCCACTTGAACGTCTCAGACACGAGA 418
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 360 CAGTTCGCAAACTACCCTCAGATTCTAGCCAAATGCCACTTAAACGTCTCTGACACTAGA 419
Query 419 GACGGCTCGATTATGCCTGCATGTGTTCCTCGTTTAGAATCAAACCTCGTCCTCACAAAC 478
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GACGGCTGGATTATGCCTGCATGTGTTCCTCGTTTAGAATCAAGCCTCGTCCTCACAAAG 479
Query 479 TTCACCAAGTCACAATACTCAATGAGTTTGAACGATTCCAAGTTTACAGGGATTGGTATT 538
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 TTCACCAAGTCGCAGTACTCAATGAGTTTGAACGATTCAAAGTTTACAGGGATTGGTATT 539
Query 539 GGTAAAGAAGATGATTGGATCGTTGTAGTCCTCACTACCAACACACCAGAAGGAAGCTAT 598
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 540 GGTAAAGAAGATGATTGGATCGTTGTGGTTCTCACTACCAACACACCAGAAGGAAGCTAT 599
Query 599 TCTACAGCTACTCCTACAAAACAAGAGTCTAATGGCTTCACCTTTGGTATTGGTCTCGTT 658
||||||||||| ||||||||||| || || ||||| ||||||||| || |||||||||||
Sbjct 600 TCTACAGCTACACCTACAAAACAGGATTCCAATGGTTTCACCTTTAGTGTTGGTCTCGTT 659
Query 659 AGTTATTT-AGTCATTTTCATGTACTCTTCCTTTTGTTTCTTTCTCTTTTGAGATATCAA 717
|||||||| | |||||||||||| | ||||||||||||||| |||||||||||| ||||
Sbjct 660 AGTTATTTGA-TCATTTTCATGT--T-TTCCTTTTGTTTCTTCCTCTTTTGAGATGTCAA 715
Query 718 ATGTTTTGATGAGTTA-TC--AAA-CACTCTTTCCTTTAGACTATCAAGAATAAATTTTG 773
||||||| ||||||| || ||| | |||||||||||||||||||||||||||||||||
Sbjct 716 ATGTTTTCATGAGTTTGTCTCAAAACTCTCTTTCCTTTAGACTATCAAGAATAAATTTTG 775
Query 774 TTAAAGAT 781
||||||||
Sbjct 776 TTAAAGAT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5