BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06040.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477903 jgi|Araly1|477903|fgenesh2_kg.3__604__AT3G06040.2 1107 0.0
> Ahg477903 jgi|Araly1|477903|fgenesh2_kg.3__604__AT3G06040.2
Length=986
Score = 1107 bits (599), Expect = 0.0
Identities = 700/747 (94%), Gaps = 14/747 (2%)
Strand=Plus/Plus
Query 112 ACATGAAATGATCTTGGGTTGATG-TT-TGTATGGTAGCAGAGGAATAGTAGTCATGAAG 169
|||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||
Sbjct 248 ACATGAAATGATCTTGGGTTGATGTTTGTGTATGGTAACAGAGGAAT-TTAGTCATGAAG 306
Query 170 CTTATTTCACTTGTTAGAAACGTTCGTTCTCGCCAATGTCAACCGGAAGTAATCTGGTCT 229
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 307 CTTATTTCACTTGTCAGAAACGTTCGTGCTCGCCAATGTCAACCGGAAGTTATCTGGTCT 366
Query 230 GTGCAAGTTCGTTTCTTGCAGCAAGACTCTGTCTCGAAAGCTAAACCCAAGAAATACAAA 289
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 367 GTGCAAGTTCGTTTCTTGCAGCAAGATTCTGTCTCGAAAGCTAGACCCAAGAAATACAAA 426
Query 290 TACCCGTCAGTTTATGATCCGTATGGTCCTAGACCCCAGCCTTCAAGCAAAATCATGGAG 349
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 427 TACCCGTCAGTTTATGATCCCTATGGTCCTAGACCCCAGCCTTCAAACAAAATCATGGAG 486
Query 350 CTAGCTGAGCGTATAGCTGCTTTATCTCCAGAAGAAAGAAAACAGATTGGTCCTGCACTC 409
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 487 TTAGCTGAGCGTATAGCTGCATTATCTCCAGAAGAACGGAAACAGATTGGTCCTGCACTC 546
Query 410 AATGAACACCTGAGGCTTCCAAAACAACAGATGATTTCATCGGACGGCATTGGAGCAAAA 469
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 547 AATGAACACCTGAGGCTTCCAAAACAACAGATGCTTTCATCGGATGGCATTGGTGCAAAA 606
Query 470 CAAGATACCGGAGCTGGGAATGTAGAGGAGAAGAAGGAGAAGACGGCTTTCGATGTGAAG 529
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 607 CAAGATACTGGAGCTGGGAAAGTTGAGGAGAAGAAGGAGAAGACGGCTTTCGATGTGAAG 666
Query 530 TTGGAGAAGTTTAATGCATCTGATAAGATCAAAGTGATAAAAGAAGTGAGAACGTTCACA 589
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 667 TTGGAGAAGTTTAATGCATCCGATAAGATCAAAGTGATTAAAGAAGTGAGAACGTTCACG 726
Query 590 AGTTTGGGTCTGAAGGAAGCGAAAGAGCTTGTGGAGAAAGTCCCGGCTATTCTTAAACAA 649
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 AGTTTGGGTCTGAAGGAGGCGAAAGAGCTTGTGGAGAAAGTCCCGGCTATTCTTAAACAA 786
Query 650 GGTGTGACAAAGGAAGAAGCTAATGAAATCATAGCCAAGATCAAAGCTGTTGGTGGAATC 709
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 787 GGTGTGACAAAGGAAGAAGCTAATGAAATCATAGCAAAGATCAAAGCTGTAGGTGGAGTC 846
Query 710 GCAGTTATGGAGTAGGTGACTTTT-GACACTTCGA-TTGtttttttGTTTGATTCACTAT 767
|||||||||||||| ||||||||| ||||||| || |||||||| |||||||| | |
Sbjct 847 GCAGTTATGGAGTAAGTGACTTTTTGACACTT-GAATTGTTTTTC-GTTTGATTTGGT-T 903
Query 768 T-TGGTATTGTGATCACATCTTGGTACTTA-AGGTAGATGTTTTGTAATAACAAATCGAT 825
| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 904 TGTGGTATTGTGATCACATCTTGGTACTTACAG-TAGATGTTTTGTAATAACAAATCAAT 962
Query 826 TACTTGACATTGAGTTTTCAAGAACTT 852
|| | ||||||||||||||||||||
Sbjct 963 TAGT---CATTGAGTTTTCAAGAACTT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5