BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06050.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477906 jgi|Araly1|477906|fgenesh2_kg.3__607__AT3G06050.1 1243 0.0
Ahg359737 jgi|Araly1|359737|fgenesh1_pg.C_scaffold_831000001 604 3e-172
> Ahg477906 jgi|Araly1|477906|fgenesh2_kg.3__607__AT3G06050.1
Length=828
Score = 1243 bits (673), Expect = 0.0
Identities = 780/831 (94%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 32 GTCTCAATCTTATTTTCAGCGATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCA 91
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCGATCTCATTTTCAGCGATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCT 60
Query 92 CTAAGATCGGCGGCAAATAGTGCCCGGATCGGAGTTTCATCGAGGGGTTTCTCAAAGCTC 151
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTAAGGTCGGCCGCAAATAGTGCCCGGATCGGAGTTTCCTCGAGGGGTTTCTCAAAGCTT 120
Query 152 GCGGAAGGCACTGACATAACCTCGGCGGCGCCTGGCGTTTCTCTCCAGAAAGCTCGCAGC 211
||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 GCGGAGGGCGCTGACATAACCTCGGCGGCTCCCGGCGTTTCTCTCCAGAAAGCTCGCAGC 180
Query 212 TGGGACGAAGGTGTTTCCTCCAAATTCTCCACCACGCCATTGTCAGATATCTTCAAGGGG 271
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TGGGACGAAGGCGTTTCCTCCAAATTCTCCACCACACCATTGTCAGATATCTTCAAGGGG 240
Query 272 AAGAAAGTCGTCATCTTTGGTCTTCCTGGGGCTTACACGGGAGTTTGTTCACAGCAGCAT 331
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 241 AAGAAAGTCGTCATCTTTGGACTCCCTGGGGCTTACACGGGAGTTTGTTCGCAGCAGCAT 300
Query 332 GTGCCTAGCTACAAGAGCCACATTGATAAGTTTAAAGCCAAAGGCATTGATTCTGTCATC 391
||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 301 GTGCCTAGCTACAAGAGCCACATTGATAAGTTTAAGGCTAAAGGCATTGATTCTGTCGTA 360
Query 392 TGTGTCTCTGTTAATGATCCCTTTGCTATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAA 451
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 361 TGTGTCTCTGTTAATGATCCCTATGCTATCAATGGTTGGGCTGAGAAGCTTGGTGCCAAA 420
Query 452 GATGCAATTGAGTTTTATGGAGATTTTGATGGGAAATTTCACAAAAGCTTGGGGCTAGAC 511
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GATGCAATTGAGTTTTATGGGGATTTTGATGGGAAATTCCACAAAAGCTTGGGGCTAGAC 480
Query 512 AAGGATCTCTCTGCTGCATTGCTCGGGCCACGGTCTGAGAGATGGTCGGCTTATGTAGAA 571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGATCTCTCTGCTGCATTACTCGGGCCACGGTCTGAGAGATGGTCGGCTTATGTAGAA 540
Query 572 GACGGGAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGG 631
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACGGTAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGG 600
Query 632 GCAGAAGTCATCTTAGGACAGATCTAAAAAG--TATTT-CCAGAGTTGCTGTTTCTTCTG 688
||||||||||||||||||||||||||||| | | ||| ||||||||| |||||||||||
Sbjct 601 GCAGAAGTCATCTTAGGACAGATCTAAAAGGGGTTTTTTCCAGAGTTGTTGTTTCTTCTG 660
Query 689 AGTTGCAACTGATAATAAGTTTGATCCGAACATGTCTC-AAGGATCAGACCAAGTAACAG 747
| |||||||||| |||||||||||||||||||||| || |||||||| |||||| |||||
Sbjct 661 ACTTGCAACTGAAAATAAGTTTGATCCGAACATGT-TCCAAGGATCACACCAAGAAACAG 719
Query 748 CTTCACTTCTTTT-GTTTTGTTTCCACAGTTTCAGTTTAAATAAAACTTATGTGTCTTGC 806
|||||||| |||| ||||||||||||||||||| |||| ||||||| |||||||| ||||
Sbjct 720 CTTCACTTGTTTTTGTTTTGTTTCCACAGTTTCTGTTTCAATAAAAATTATGTGTTTTGC 779
Query 807 CGTTTCTCACCAAA-TGTAAATCTGGTTCATAATATGAATAAGAAACCAAT 856
|||||||||||||| |||||||| | | |||||||| ||| ||||||||||
Sbjct 780 CGTTTCTCACCAAAATGTAAATC-GAT-CATAATATAAATTAGAAACCAAT 828
> Ahg359737 jgi|Araly1|359737|fgenesh1_pg.C_scaffold_831000001
Length=411
Score = 604 bits (327), Expect = 3e-172
Identities = 349/360 (97%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 299 GGGGCTTACACGGGAGTTTGTTCACAGCAGCATGTGCCTAGCTACAAGAGCCACATTGAT 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 52 GGGGCTTACACGGGAGTTTGTTCGCAGCAGCATGTGCCTAGCTACAAGAGCCACATTGAT 111
Query 359 AAGTTTAAAGCCAAAGGCATTGATTCTGTCATCTGTGTCTCTGTTAATGATCCCTTTGCT 418
|||||||| || |||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 112 AAGTTTAAGGCTAAAGGCATTGATTCTGTCGTATGTGTCTCTGTTAATGATCCCTATGCT 171
Query 419 ATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAAGATGCAATTGAGTTTTATGGAGATTTT 478
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 ATCAATGGTTGGGCTGAGAAGCTTGGTGCCAAAGATGCAATTGAGTTTTATGGGGATTTT 231
Query 479 GATGGGAAATTTCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTGCTCGGG 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 232 GATGGGAAATTCCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTACTCGGG 291
Query 539 CCACGGTCTGAGAGATGGTCGGCTTATGTAGAAGACGGGAAGGTTAAGGCGGTGAATGTG 598
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 292 CCACGGTCTGAGAGATGGTCGGCTTATGTAGAAGACGGTAAGGTTAAGGCGGTGAATGTG 351
Query 599 GAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5