BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06060.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477907 jgi|Araly1|477907|fgenesh2_kg.3__608__AT3G06060.1 1653 0.0
> Ahg477907 jgi|Araly1|477907|fgenesh2_kg.3__608__AT3G06060.1
Length=1207
Score = 1653 bits (895), Expect = 0.0
Identities = 1021/1082 (94%), Gaps = 8/1082 (1%)
Strand=Plus/Plus
Query 2 ACGGAGCTTCACATCGCCGAGAGCTTCGTCACGAGATCCATGGCGGCCATTTCTCCTCTC 61
|||||| ||||||||||||||||||| || |||||||| ||||||||||||||| || ||
Sbjct 1 ACGGAGATTCACATCGCCGAGAGCTTTGTGACGAGATCAATGGCGGCCATTTCTACTTTC 60
Query 62 TTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATT 121
|||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 61 TTCCTTCTCTTCCTCATTCCCATTGTCCCTCTCTCGATTCTCGCTATCTTAGCCCTAATC 120
Query 122 GTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGA 181
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GTACGTCCTCGCCCCATTAAGATCCCTATCAAGTCCCGTCACGTCTTCATCACCGGTGGA 180
Query 182 TCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCA 241
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 181 TCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTGCCGAGGGTGCTCGTGTCTCA 240
Query 242 ATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACT 301
|||||||||||||||| |||||| ||||| ||||| ||| ||||||||| ||||||
Sbjct 241 ATCCTCGCCCGATCCGCCGGAAAGCTAGAGGAAGCTAAAAAAGAGATCCAGCTGGCCACT 300
Query 302 GGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCG 361
||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 301 GGTGTCGTAGTCGCCACATTCTCCGCCGACGTTCGCGATTACGATGCAGTGTCGAAGGCG 360
Query 362 ATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAG 421
|| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATTGACGAATCTGGACCGATCGATGTGTTGATTGTTAATCAAGGTGTGTTTACGGCGAAG 420
Query 422 GAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGG 481
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 421 GAGCTGGTGAAACATAGTCCTGAGGATGTCAAATTCACGATTGACGTGAATCTTGTTGGG 480
Query 482 AGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCT 541
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AGCTTCAATGTGATTAAAGCCGCTTTGCCCGCCATGAAAGCAAGGAAAGATCGTGGACCT 540
Query 542 GCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCA 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTGGGTGTCTATGGTTATGCTGCA 600
Query 602 TATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATA 661
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 601 TATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCACAAGCACTGCAACAAGAAGTTAT- 659
Query 662 T-CTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGA 720
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TGCTGATGACATTCATGTCACTCTTATTTTTCCTCCTGACACCAATACACCCGGCTTTGA 719
Query 721 AGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAAT 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAAGAACAGAAGAGTAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAAT 779
Query 781 GGAAACAGAAGAAGTAG-CAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCG 839
||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| |
Sbjct 780 GGAAACAGAAGAAGTAGCCAGAAAA-GCTATGGATGGCATAAAAGCAGGAAAGTTCACTG 838
Query 840 TCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAA 898
Query 900 GATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTC 959
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 GATCATTTTGGCTTGCATTTCTTGAAGTAATAACCGCAGGGCCTATAAGATTAATCGCTC 958
Query 960 TCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAAT 1018
Query 1020 -G-ACAGCCCGACAATGTATCTTGAAGTGCTTTT--GGCAGAAGCTTAAACATTGATGGG 1075
| ||||||||||||||| ||||||||| |||| |||||||||| |||||| ||||||
Sbjct 1019 AGTACAGCCCGACAATGTTTCTTGAAGTTTTTTTTTGGCAGAAGCTGAAACATAGATGGG 1078
Query 1076 TA 1077
||
Sbjct 1079 TA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5