BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06070.1

Length=781
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903471 jgi|Araly1|903471|Al_scaffold_0003_599                     682    0.0  


> Ahg903471 jgi|Araly1|903471|Al_scaffold_0003_599
Length=459

 Score =  682 bits (369),  Expect = 0.0
 Identities = 426/452 (94%), Gaps = 9/452 (2%)
 Strand=Plus/Plus

Query  85   TGGAGCTCGAGCTTGATGATGATGTCTTCTTTGCTGACATAAGCAAGCAACTCAATCTCT  144
            ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  14   TGGAGCTTGAGCTTGATGATGATGTTTTCTTTGCGGACATAAGCAAGCAACTCAATCTCT  73

Query  145  TAATCACAGATGAAGATGAACAAAACCCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG  204
            ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct  74   TAATCACAGATGAAGATGAGCAAAAATCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG  133

Query  205  GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA  193

Query  265  TCAATTACAACGTAATTCGAGAGAGCAAAGGAACAGGAGTGTTTATCCCAAGATCTTCTC  324
            |||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  194  TCAATTACAACGTAA---GAGAGAGCAAAGGAACAGGAGTGTTCATCCCAAGATCTTCTC  250

Query  325  AGCCAAGAAGGAAACATAATCATCATCCTCATCAGAAGAAGCAAGGGAGATTCATCGGTT  384
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||
Sbjct  251  AGCCAAGAAGGAAACATAATCATCATCCTCATCAAAAGAAGCAAGGGAGATTC---GGTT  307

Query  385  CCTTTATCCCCAAGCAACAGTTTCCTCATCATG--GC-CATGACAACAATCTTACAACTC  441
            |||| |||||||||||||||||||||||||||   |  |||||||||||||  |||||| 
Sbjct  308  CCTTCATCCCCAAGCAACAGTTTCCTCATCATCATGTTCATGACAACAATCCCACAACTT  367

Query  442  TCAACAACAACAACCAAGAAAGCATCACCTTTCATCATGCTTCTACTAACCCAAGAAGAA  501
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct  368  TCAACAACAACAACCAAGAAAGCATCACCTTTTATCATCCTTCTACTAACCCGAGAAGAA  427

Query  502  CCTACAGAGATGCAGCATCTCTTTTCACTTAG  533
            ||||||||||||||||||||||||||||||||
Sbjct  428  CCTACAGAGATGCAGCATCTCTTTTCACTTAG  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28820925252


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5