BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06080.2
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928231 jgi|Araly1|928231|scaffold_300688.1 2183 0.0
Ahg928230 jgi|Araly1|928230|scaffold_300687.1 265 1e-69
> Ahg928231 jgi|Araly1|928231|scaffold_300688.1
Length=1438
Score = 2183 bits (1182), Expect = 0.0
Identities = 1333/1407 (95%), Gaps = 6/1407 (0%)
Strand=Plus/Plus
Query 452 TACTTTCAGATGTCTAAGAACTCAAACGTTGAAGAGAATGGAGGAGCAAAGCCAATCTGT 511
||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 12 TACCTTCAGATGTCTAAGAACTCAAACCTTGAAGAAAACGGAGGAGCAAAGCCAATCTGT 71
Query 512 GAAGCTTTGAGGAGATTCAAAAGGTCGAGGCTTGTGTTCGAGCCGTCTTTAGGAGTgttg 571
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 GAAGCTTTGAAGAGATTCAAAAGGTCGAGACTTGTGTTCGAGCCGTCTTTAGGAGTGTTG 131
Query 572 gggtt-tttcttggttggggtctgtttggtttgcagttttttcttctttgATTACAGAAG 630
||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 132 GGGTTCTTT-TTGGTTGGGGTGTGTTTGGTTTGCAGTTTTTTCTTATTTGATTACAGAAA 190
Query 631 CGTTGCTAAAAGCTATGGCCTTTCGGATAAATCTGAGAGATTCGTTTGGCTCAAGTTTGA 690
||| |||| |||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 191 CGTAGCTAGAAGCTATGGCCTTTCGGATAAATCAGACAGATTCGTTTGGCTCAAGCTTGA 250
Query 691 CAATATCAGCAGCAGCAGCAGTAGTAGTAGTAATAGTTCAAAGAGAGTTGGGTTTCTGGA 750
| | | || || |||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 251 C-A-A-CAACATCAGCAGCAACACTAGTAGTAATAGTTCAAAGAGAGTTGGATTTCTGGA 307
Query 751 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGGTTTGGGACGAGTCTTATCC 810
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 308 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGATTTGGGACGAGTCTTATCC 367
Query 811 ATTGTATCAATCCAAAGATTGCAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 870
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 368 ATTGTATCAATCCAAAGATTGTAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 427
Query 871 AAGGTCTGATTTGTTCTATACTCAGTGGCGTTGGCAACCTAGACACTGTAATTTGCCCAG 930
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 428 AAGGTCTGATTTGTTCTATACTCAGTGGCGATGGCAACCTAGACACTGCAATTTGCCCAG 487
Query 931 ATTTGATGCAAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTTGTGTTTGTTGGCGA 990
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 488 ATTTGATGCTAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTAGTGTTTGTTGGAGA 547
Query 991 TTCAATAGGAAGAAACCAGTGGGAGTCTCTACTTTGTCTACTATCTTCTGCAGTCAAGAA 1050
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 548 TTCAATAGGAAGAAACCAGTGGGAGTCTCTTCTGTGTCTACTATCTTCTGCAGTCAAGAA 607
Query 1051 CGAGAGCTTGATTTATGAAATAAATGGAAGTCCGATCACAAAGCACAAAGGGTTCTTGGT 1110
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 CGAGAGCTTAATTTATGAAATAAATGGAAGTCCCATCACAAAGCACAAAGGGTTCTTGGT 667
Query 1111 GTTCAAATTTGAGGAGTACAATTGCACAGTGGAGTACTACAGATCTCCATTTTTGGTTCC 1170
||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 668 GTTCAAATTTGAGGAGTACAATTGCACTGTGGAGTACTACAGATCACCATTTCTGGTTCC 727
Query 1171 TCAAAGCAGACCACCGATTGGATCACCTGGAAAGGTCAAGACAAGTTTGAAACTGGACAC 1230
||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 728 TCAAAGCAGACCACCGATTGGATCACCCCAAAAGGTTAAGACAACTTTGAAACTGGACAC 787
Query 1231 TATGGATTGGACTTCAAGCAAATGGAGAGATGCTGACGTTTTAGTGCTCAATACTGGACA 1290
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 788 TATGGATTGGACTTCAAGCAAATGGAGAGATGCAAACGTTTTAGTGCTCAATACTGGTCA 847
Query 1291 CTGGTGGAACGAGGGGAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 1350
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTGGTGGAACGAGGGAAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 907
Query 1351 AAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 1410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 967
Query 1411 GATACATACCGAGCTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACTTTCGCCCCCGT 1470
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 968 GATACATACCGAGGTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACATTCGCTCCCGT 1027
Query 1471 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCATATGGAGACATTACCAGA 1530
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1028 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCACATGGAAACATTACCAGA 1087
Query 1531 GATTGGAACCTCATTGGCTTCATCAGAGACCTGGGAACAGTTAAAGATCCTCAGAGATGT 1590
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1088 GATTGGAACCTCATTGGCTTCATCAGAGACATGGGAACAGTCAAAGATCCTCAGAGATGT 1147
Query 1591 GTTGTCACATAACTCAAACAGATCAGAGACTGTTAAAGTGAAACTGTTGAACATAACGGC 1650
|||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1148 GTTGTCACATTACTCGAACAGATCAGAGACTGTTAAAATGAAAGTGTTGAACATAACGGC 1207
Query 1651 AATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCATGGTCC 1710
||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | ||||
Sbjct 1208 AATGGCTGCTCAAAGAAAAGACGGCCACCCATCGCTCTACTATCTTGGTCCGCTTAGTCC 1267
Query 1711 TGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGACACGTG 1770
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1268 TGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCAGACACGTG 1327
Query 1771 GAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGAGT 1830
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1328 GAACGAGGTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGTGT 1387
Query 1831 TGAAGAAGCGAACAGTACAGGAAATGT 1857
|||||||||||| | |||||||| |||
Sbjct 1388 TGAAGAAGCGAATACTACAGGAA-TGT 1413
> Ahg928230 jgi|Araly1|928230|scaffold_300687.1
Length=296
Score = 265 bits (143), Expect = 1e-69
Identities = 161/170 (95%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 1645 AACGGCAATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCA 1704
||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||||
Sbjct 15 AACAGCAATGGCTGCTCAAAGAAAAGACGGTCATCCATCGCTTTACTATCACGGTCCGCT 74
Query 1705 TGGTCCTGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGA 1764
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 75 TGGTCCTGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGTCTTCCCGGTGTTCCTGA 134
Query 1765 CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT 1814
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79837153520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5