BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06100.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477911 jgi|Araly1|477911|fgenesh2_kg.3__612__AT3G06100.1 1557 0.0
> Ahg477911 jgi|Araly1|477911|fgenesh2_kg.3__612__AT3G06100.1
Length=1123
Score = 1557 bits (843), Expect = 0.0
Identities = 1052/1148 (92%), Gaps = 34/1148 (3%)
Strand=Plus/Plus
Query 27 tttccatcttctttgcgtttttctctctatctctc--ttt--ttttGTTCCATTAGATCA 82
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||
Sbjct 1 TTTCCATCTTCTTTGCGTTTTTCTCTCTATCTCTCTTTTTAATTTTGCTCCATTAGGTCA 60
Query 83 TTCATAAAGCGGATCAAGCCACCTTGATTGTGACTTTCCTCAG-TTCTTGATCACTATAT 141
|||||||||| ||||||||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 61 TTCATAAAGCCGATCAAGCCTCCTTGATTGTGACTGTCCT-AGCTTCTTGATCACTATAT 119
Query 142 CTTGAAGGA-ATTAAGAAGATGAATGGTGAGGCACGGTCAAGAGTAGTCGACCAAGAAGC 200
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CTTGAGGGATATTAAGAAGATGAATGGTGAGGCACGGTCAAGAGTAGTTGACCAAGAAGC 179
Query 201 TGGCTCAACTCCATCTACTTTGAGAGATGAAGATCATCCCTCGAGACAAAGGCTTTTCGG 260
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGGCTCAACTCCGTCTACTTTGAGAGATGAAGATCATCCTTCGAGACAAAGGCTTTTCGG 239
Query 261 ATGTCTCCCTTATGATATAGATCTCAATCCCCTACGCATTGTAATGGCGGAATTGGTGGG 320
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 240 ATGTCTCCCTTATGATATAGATCTCAATCCCATACGCATTGTAATGGCGGAATTTGTGGG 299
Query 321 GACATTCATTCTAATGTTCAGTGTGTGTGGGGTCATAAGCAGTACCCAATTATCCGGCGG 380
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 300 GACATTCATTCTAATGTTCAGTGTGTGTGGGGTCATAAGCAGTACTCAATTATCTGGTGG 359
Query 381 CCACGTGGGATTGCTAGAGTACGCCGTCACCGCTGGATTATCTGTGGTGGTCGTAGTTTA 440
||| || ||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 360 CCATGTCGGATTGCTAGAATACGCCGCCACCGCTGGATTATCGGTGGTGGTTGTAGTTTA 419
Query 441 CTCCATCGGACACATCTCTGGCGCCCATCTTAACCCTTCCATCACCATTGCTTTCGCTGT 500
||| |||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 420 CTCTATCGGACACATCTCCGGCGCCCATCTTAACCCATCGATCACCATCGCTTTCGCTGT 479
Query 501 CTTTGGCGGATTCCCGTGGTCTCAGGTTCCGTTGTATATAACGGCGCAAACATTGGGGGC 560
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 480 CTTTGGCGGATTCCCGTGGTCTCAGGTTCCGTTATATATAACAGCGCAAACGTTGGGGGC 539
Query 561 AACGGCGGCAACATTAGTTGGGGTGTCAGTGTACGGAGTAAACGCTGACATTATGGCAAC 620
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 AACGGCGGCAACATTAGTTGGGGTGTCAGTCTACGGAGTAAACGCTGACATTATGGCAAC 599
Query 621 AAAACCTGCTTTAAGCTGCGTTTCTGCATTTTTCGTTGAACTCATAGCTACGAGCATCGT 680
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAACCTGCGTTAAGCTGCGTTTCTGCATTTTTCGTTGAACTCATAGCTACGAGCATCGT 659
Query 681 CGTGTTTCTCGCCTCCGCGTTGCATTGTGGTCCTCATCAAAATTTGGGTAATTTGACGGG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGTGTTTCTCGCCTCCGCGTTGCATTGTGGTCCTCATCAAAATTTGGGTAATTTGACGGG 719
Query 741 GTTCGTGATTGGAACAGTCATTTCCCTTGGAGTGCTTATTACCGGACCGATTTCAGGAGG 800
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GTTCGTGATTGGAACAGTCATTTCCCTCGGAGTGCTTATTACCGGACCGATTTCAGGAGG 779
Query 801 ATCGATGAACCCAGCTCGATCACTTGGACCGGCGGTGGTGGCATGGGATTTTGAAGACTT 860
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 780 ATCGATGAACCCAGCTCGATCACTAGGACCAGCGGTGGTGGCATGGGATTTTGAGGACTT 839
Query 861 ATGGATTTACATGACAGCTCCGGTGATCGGAGCCATAATCGGAGTTTTGACATACAGATC 920
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 840 ATGGATTTACATGACGGCTCCGGTGATCGGAGCTATCATCGGGGTTTTGACATACAGATC 899
Query 921 AATTAGCCTAAAAACCAGGCCTTGCCCTTCTCCAGTTTCCCCTTCCGTTTCTTCACTTTT 980
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 900 AATTAGCCTCAAAACCAGGCCTTGCCTTTCTCCACTTTCCCCTTCCGTTTCTTCACTTTT 959
Query 981 ACGTTAATCACTTCAAAACCTAATATCTATTATACAAATAAACACTTTTGAttttttttC 1040
||| | | ||| | | ||| ||||||||||||||| ||||||||||
Sbjct 960 ACG-----C--T--AAA---T--T--CTA-----CAAATAAACACTTTTTATTTTTTTTC 998
Query 1041 TTGGTTAAGGTTTTTAAGTTTTTGTCATTACGTCATTAGATGCCGT-GATGCGAAAACAG 1099
|| ||| |||||| || |||||||||||||||||| ||| ||| | |||| ||||||||
Sbjct 999 TTTTTTATGGTTTTAAAATTTTTGTCATTACGTCATAAGA-GCCCTTGATGTGAAAACAG 1057
Query 1100 AGAGCTACTTATCGGATT--GAAGATATAGAGGGTAAAGCAAATGAAAACAGGGGGCATT 1157
| | || ||| |||| | || | | | ||| |||||||||||||||||| | |||||
Sbjct 1058 AAATCTTCTTTTCGG-TGCCGACCAAAAAAAGG-TAAAGCAAATGAAAACAGAGAGCATT 1115
Query 1158 TTGTTCTT 1165
||||||||
Sbjct 1116 TTGTTCTT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5