BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06110.2
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477912 jgi|Araly1|477912|fgenesh2_kg.3__613__AT3G06110.2 915 0.0
Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640 244 5e-64
> Ahg477912 jgi|Araly1|477912|fgenesh2_kg.3__613__AT3G06110.2
Length=694
Score = 915 bits (495), Expect = 0.0
Identities = 564/597 (94%), Gaps = 5/597 (1%)
Strand=Plus/Plus
Query 5 ACAAGTGGAATTTTGAAAAAAGAAGCAGAGAGCGATGGAGAAAGTGGTTGATCTCTTCGG 64
||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2 ACAAGTGGAATTTTG-AAAAA-AAGCAGAGA--GATGGAGAAAGTGGTTGATCTCTTCGG 57
Query 65 AGTCGGAGAAGCTAATTCCCAGAAGCTACTCGAAGGAGGCAAAGATCTCAGCGAGATCCA 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 AGTCGGAGAAGCTAATTCCCAGAAGCTACTCAAAGGAGGCAAAGATCTCAGCGAGATCCA 117
Query 125 ACAGGGATTGTTCATAGGATCAGTAGCTGAAGCGAATAACAAGGATTTTCTCAAAAGCTC 184
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 118 ACAGGGATTGTTCATAGGATCAGTAGCTGAAGCGACTAACAAAGATTTGCTCAAAAGCTC 177
Query 185 TAATATCACTCATGTCTTAACCGTTGCTGTGGCCTTGGCTCCTCCTTATCCTGATGATTT 244
|| ||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 178 CAACATCACTCATATCTTAACCGTAGCTGTGGCCCTGGCTCCTCCTTATGCTGATGATTT 237
Query 245 TGTCTACAAAGTCATTGAAGTGGTTGATAGATCCGAGACCGATTTGACAGTATATTTCGA 304
||| || |||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 238 TGTTTATAAAGTCATCGAAGTTGTTGATAGAGACGAGACCGATTTGACAGTATATTTCGA 297
Query 305 TGAGTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTG 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGAGTGTTTTAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTG 357
Query 365 CTTCATGGGAATGTCTAGGAGTGTGACTATAGTGGTGGCTTACCTGATGAAAAAGCATGG 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 CTTCATGGGAATGTCTAGGAGTGTGACTATAGTGGTGGCTTATCTGATGAAAAAGCATGG 417
Query 425 AATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAGCCGACGACATCAGGCATATCCTAA 484
| ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 418 ATTGGGATTCTCTAAAGCTATGGAACTCGTAAGGAGCCGAAGACATCAGGCATTTCCTAA 477
Query 485 TCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAAATCCATCCAAGGTAATGCATGATT 544
| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 478 TTCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAAATCCTTACAAGGTA-TGCATGATT 536
Query 545 GCTTCAGCTGATAAGAAGATTCAAGATAGTGGCATGATGAACTCTCATGAAATTCCG 601
| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 537 GTTTCAGCTGATAAGAAGATTCAAGATAGTGTCATGATGAACTCTCAAGAAATTCCG 593
Score = 176 bits (95), Expect = 2e-43
Identities = 99/101 (98%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 640 TTGGTTTCGTGCTGTGAAGGATTTTTTCTTGTGAACTATTGATGGTGAGCACTTTGCCAT 699
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTGATTTCGTGCTGTGAAGGATTTTTTCTTGTGAACTATTGATGGTGAGCACTTTGCCAT 653
Query 700 GTCCATTAGCCAATTGAAATGAATGAAAACGCAGAATTTAC 740
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 GTCCATTAGCCAATTGAAATAAATGAAAACGCAGAATTTAC 694
> Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640
Length=1017
Score = 244 bits (132), Expect = 5e-64
Identities = 216/251 (86%), Gaps = 28/251 (11%)
Strand=Plus/Plus
Query 308 GTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTGTTTTAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTGCTT 803
Query 368 CATGGGAATGTCTAGGAG-T-GT-GA--CT---AT-A--G-----TG-G-T--G-G---- 402
|||||||||||||||||| | || || || || | | || | | | |
Sbjct 804 CATGGGAATGTCTAGGAGCTTGTTGATTCTGGTATCATTGGGGACTGTGGTAAGAGTGGT 863
Query 403 --CTTACCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAG 460
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 864 GGCTTATCTGATGAAAAAGCATGGAATGGGATTCTCTAAAGCTATGGAACTCATAAGGAG 923
Query 461 CCGACGACATCAGGCATATCCTAATCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAA 520
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 924 CCGACGACATCAGGCATATCCTAATTCCGGTTTCATTT-GCAGCTCCAACAATTTGAAAA 982
Query 521 ATCCATCCAAG 531
||||||| |||
Sbjct 983 ATCCATCTAAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5