BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06120.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928234 jgi|Araly1|928234|scaffold_300691.1 1024 0.0
> Ahg928234 jgi|Araly1|928234|scaffold_300691.1
Length=649
Score = 1024 bits (554), Expect = 0.0
Identities = 607/632 (96%), Gaps = 6/632 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCC 80
Query 61 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGAGATCAAGCTTCGATCATCGGA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 81 CTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGTGATCAAGCTTCGATCATCGGA 140
Query 121 GGAGTGATAGAGTTCATCAAAGAGTTGCAGCAATTGGTTCAAGTTCTTGAGTCCAAGAAA 180
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 141 GGAGTGATCGAGTTCATCAAAGAGTTGCAGCAATTGGTGCAAGTTCTCGAGTCCAAGAAA 200
Query 181 CGTCGAAAGACCCTAAACCGACCATCTTTCCCTTATGATCACCAGACAATCGAGCCATCC 240
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 201 CGTCGAAAGACACTAAACCGCCCTTCTTTCCCTTATGATCACCAAACAATCGAGCCATCC 260
Query 241 AGTTTAGG-AGC-C-GCCACTACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 297
| |||||| || | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 261 AATTTAGGCGGCGCAGCCACCACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACC 320
Query 298 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCC 380
Query 358 AAGATTTCAGGTTCTAATGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGGCAGCTC 417
||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 381 AAGATCTCTGGTTCTAACGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGCCAGCTC 440
Query 418 GTAAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTTAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGT 500
Query 478 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTA 560
Query 538 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCTGATGAAGTGATCGTC 597
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 561 AGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCAGA--AA-TGATCGTC 617
Query 598 TCTACCAATTAAAAACAAAATTCTACATGTAC 629
|||||||||||||| |||||||||||||||||
Sbjct 618 TCTACCAATTAAAACCAAAATTCTACATGTAC 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5