BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06130.1
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 2268 0.0
Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 206 6e-52
> Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1
Length=1738
Score = 2268 bits (1228), Expect = 0.0
Identities = 1614/1781 (91%), Gaps = 104/1781 (6%)
Strand=Plus/Plus
Query 3 AAATTGAAGCAGCGACTTTACTtctctctctctctctttctctctGACTCTGAAAAAGAT 62
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTGAAGCAGCGACTTTAC-T-TCTCTCTCTCTCTTTCTCTCTGACTCTGAAAAAGAT 58
Query 63 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAAGTC-GAAAtctttctttctt 121
|||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||
Sbjct 59 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAACTCTG-AATCTTTCTTCCTT 117
Query 122 cttctttgccttctttcaagtgctttccctctctcattctccttcttcctcctctgtttc 181
||||||||||||||||||||||| || | |||||||||||||||||| | ||||||| |
Sbjct 118 CTTCTTTGCCTTCTTTCAAGTGC-TT-CGTCTCTCATTCTCCTTCTT-C-CCTCTGTGGC 173
Query 182 tttGTTGTTCTAAACTTaaaaaa---aGATTGAAGTTGCAAGTAACAGAGGAGCTGTCTC 238
|||||| || | ||| ||||||| |||||||||||| ||||| | |||||||||||||
Sbjct 174 TTTGTTCTTTTCAAC-TAAAAAAGCCAGATTGAAGTTGGAAGTACCTGAGGAGCTGTCTC 232
Query 239 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTGAGTTGAGGAAAAATGAGTAAAGAAGA 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 233 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTAAGTTGAGGAAAAATGAGTAAAGAAGA 292
Query 299 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAACATACACTGTGATGGCTGTAAGCA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 293 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAATATACACTGTGATGGCTGTAAGCA 352
Query 359 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 412
Query 419 GCAAGGGAAAGTGACTGTCTCTGGGAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 413 GCAAGGGAAAGTGACTGTCTCTGGAAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 472
Query 479 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCCAATCA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 473 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCGAATCA 532
Query 539 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACCATGGAAAAGCCGGAGGCGG 598
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 533 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACAATGGAAAAGGCGCTGGCGG 592
Query 599 TGGTGGCGG---AAACAATAATAACAACAAGAAAGGCCAGAAAAACGGCGGAGGAGGTGG 655
||| ||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 593 TGGCGGCGGCGGAAACAATAATAACAACAAGAAAGGCCAGAAAA--G-CGGAGGAGG--- 646
Query 656 CGGCGGTGGAGGTGGAGGTAACAGTAATGCGCCAAAGATGGGCCAGCAACTGAATCCACA 715
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 647 CGGCGG---AGG---AGGTAACAGTAATGCGCCAAAGATGGGTCAGCAACTGAATCCACA 700
Query 716 ACATTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCC 775
|||| ||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 701 ACATATGCAGCAGCTTCA---G----A-A-GATGAAAGGGTTTCAAGATCTGAAGCTTCC 751
Query 776 TCCTCAGTTAAAAGGCTCTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTCAAGTT 835
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 752 TCCTCAGGTAAAAGGCTTTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTGAAGTT 811
Query 836 TGATGTCCCtgaagatgatgatgatgatgatttcagtgacgaattcgatgatgaatttac 895
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 812 TGATGTTCCTGAGGATGATGATGATGATGATTTTAGTGACGAATTCGATGATGAGTTTAC 871
Query 896 tgatgatgatgacgacgagtttgatgatgagtttgacgatCTCCCTCTTCCGTCTAATAA 955
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 872 TGATGATGATGACGACGAGTTTGATGATGAGTTTGATGATCTCCCTCTTCCGTCTAATAA 931
Query 956 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAGAA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 932 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAAAA 991
Query 1016 GAATGCCAATCTTGCCGGTGGTCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGCTGG 1075
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 992 GAATGCCAATCTTGGCGGTGGCCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGGTGG 1051
Query 1076 CGGCGGCGGTGCCGGTGGTGGAAAGGGTGCTGGCGGCGGTGCTAAGGGTGGTCCTGGGAA 1135
|||||||||| | || ||||| | | | | | | || |||| |||||
Sbjct 1052 TGGCGGCGGTGGC--------AA-GGGTGGT--C--CTG-G-T--GG-TGGT---GGGAA 1090
Query 1136 TCAAAACCAAGGTGGAGGCAAGAACGGCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1195
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1091 TCAAAACCAAGGTGGAGGCAAGAACCCCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1150
Query 1196 CGGTGGAGGCGGTGGTCCCAACGCCGGAAAAAAGGGTAACGGCGGAGGTGGGCCCATGGC 1255
|||||| | || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1151 CGGTGG------T---CCAAACGCCGGAAAGAAGGGTAACGGCGGAGGTGGGCCCATAGC 1201
Query 1256 TGGAGGAGTTTCGGGAGGTTTCCGACCCATGGGAGGTGGAGGACCACAGAATATGAGCAT 1315
||||||| || |||| |||||||| || |||||||| |||||||||| ||| ||||||||
Sbjct 1202 TGGAGGACTTCCGGGTGGTTTCCGTCCTATGGGAGGCGGAGGACCACCGAACATGAGCAT 1261
Query 1316 GCCAATGGGTGGTCAAATGGGTATGGGTGGTCCGATGGGGAATATGCCGGCGGTTCAGGG 1375
|||||||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 1262 GCCAATGGGT----A--TGGGT--GG-T---CCGATGGGGAATATGCCGGCGGTTCAGGG 1309
Query 1376 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGATAGA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1310 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGCCAGA 1369
Query 1436 TCCTATGCAAATGCAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCA 1495
||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1370 TCCTATGCAAATGCAGCAACAGCAA------------TATTTAGCAGCGGTTATGAACCA 1417
Query 1496 GCAACGAGCTATGGGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGC 1555
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1418 GCAACGAGCTATGGGGAACGAGCGGTTCCAACCAATGATGTACGCACGACCACCACCGGC 1477
Query 1556 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1478 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTA-CC----C- 1531
Query 1616 GTACCCGTATCCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1675
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GTA----T--CCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1585
Query 1676 CGAGAACACATCAAGCTGCGATATTATGTGAGATGGTTAAAAA-TCA-AAATAAAACTTT 1733
|||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1586 CGAGAACACATCAAGCTGTGATATTATGTGAGATGGTTAAAAAATCTTAAATAAAACTTC 1645
Query 1734 TATAGTTTGTGTGTATTTGAATCCTAAGTTGGGGttttttt 1774
|||||||||||||| ||||||||||||||||| |||||||
Sbjct 1646 AATAGTTTGTGTGTAATTGAATCCTAAGTTGGGTTTTTTTT 1686
Score = 86.1 bits (46), Expect = 9e-16
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 1786 AATGCTAAGTTGTTGTAGGtttttttttt--tCACTTTGTGATAGCTTCGGTAATTTAAT 1843
||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1665 AATCCTAAGTTG-GGTTTTTTTTTTTTTTCCTCACTTTGTGATAGCATCGGTAATTTAAT 1723
Query 1844 AGAATAATATAAAAT 1858
|||||||||||||||
Sbjct 1724 AGAATAATATAAAAT 1738
> Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2
Length=1689
Score = 206 bits (111), Expect = 6e-52
Identities = 213/261 (82%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 1449 CAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCAGCAACGAGCTATG 1508
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1271 CAGCAACAACAACAACAACAACAATACTTAGCGGCGGTTATGAACCAGCAACGAGCCATG 1330
Query 1509 GGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGCAGTTAACTATATG 1568
|| | |||||||||||| || ||||||||||| || |||||||| || || |||||||||
Sbjct 1331 GGCACCGAACGGTTCCAGCCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATG 1390
Query 1569 CCGCCA-AACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCCGTACCCGTATCC 1627
|| ||| |||| ||||||| | | | ||| | |||||||| |||||||| || | ||
Sbjct 1391 CCACCACAACC-GCACCAACAAC--A-TCCATACCCGTATCCATATCCGTATCCACA-CC 1445
Query 1628 A-TATCCTCCAC-CTTATGGGAATGATCAATACTCTCATGCCTTTAGCGACGAGAACACA 1685
| ||||| || | | |||| ||| || || ||| || ||| | ||||||||||||
Sbjct 1446 AGTATCCGCCTCACA-ATGG---TGACCAGTATTCTGATTACTTCAATGACGAGAACACA 1501
Query 1686 TCAAGCTGCGATATTATGTGA 1706
||||||||| |||||||||||
Sbjct 1502 TCAAGCTGCAATATTATGTGA 1522
Score = 115 bits (62), Expect = 1e-24
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 699 CAGCAACTGAATCCACAACA-TTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTT 757
|||||| ||||||| || || || |||||||| ||||| |||||| |||||||||||||
Sbjct 599 CAGCAATTGAATCCTCAGCAGCTT-CAGCAGCTACAACAACTTCAGCAGATGAAAGGGTT 657
Query 758 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 787
||||||||||||||||||||||||||||||
Sbjct 658 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70047960555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5