BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06130.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 2268 0.0 Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 206 6e-52 > Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 Length=1738 Score = 2268 bits (1228), Expect = 0.0 Identities = 1614/1781 (91%), Gaps = 104/1781 (6%) Strand=Plus/Plus Query 3 AAATTGAAGCAGCGACTTTACTtctctctctctctctttctctctGACTCTGAAAAAGAT 62 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1 AAATTGAAGCAGCGACTTTAC-T-TCTCTCTCTCTCTTTCTCTCTGACTCTGAAAAAGAT 58 Query 63 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAAGTC-GAAAtctttctttctt 121 |||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||| Sbjct 59 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAACTCTG-AATCTTTCTTCCTT 117 Query 122 cttctttgccttctttcaagtgctttccctctctcattctccttcttcctcctctgtttc 181 ||||||||||||||||||||||| || | |||||||||||||||||| | ||||||| | Sbjct 118 CTTCTTTGCCTTCTTTCAAGTGC-TT-CGTCTCTCATTCTCCTTCTT-C-CCTCTGTGGC 173 Query 182 tttGTTGTTCTAAACTTaaaaaa---aGATTGAAGTTGCAAGTAACAGAGGAGCTGTCTC 238 |||||| || | ||| ||||||| |||||||||||| ||||| | ||||||||||||| Sbjct 174 TTTGTTCTTTTCAAC-TAAAAAAGCCAGATTGAAGTTGGAAGTACCTGAGGAGCTGTCTC 232 Query 239 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTGAGTTGAGGAAAAATGAGTAAAGAAGA 298 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 233 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTAAGTTGAGGAAAAATGAGTAAAGAAGA 292 Query 299 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAACATACACTGTGATGGCTGTAAGCA 358 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 293 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAATATACACTGTGATGGCTGTAAGCA 352 Query 359 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 412 Query 419 GCAAGGGAAAGTGACTGTCTCTGGGAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 478 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 413 GCAAGGGAAAGTGACTGTCTCTGGAAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 472 Query 479 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCCAATCA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 473 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCGAATCA 532 Query 539 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACCATGGAAAAGCCGGAGGCGG 598 |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| Sbjct 533 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACAATGGAAAAGGCGCTGGCGG 592 Query 599 TGGTGGCGG---AAACAATAATAACAACAAGAAAGGCCAGAAAAACGGCGGAGGAGGTGG 655 ||| ||||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 593 TGGCGGCGGCGGAAACAATAATAACAACAAGAAAGGCCAGAAAA--G-CGGAGGAGG--- 646 Query 656 CGGCGGTGGAGGTGGAGGTAACAGTAATGCGCCAAAGATGGGCCAGCAACTGAATCCACA 715 |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 647 CGGCGG---AGG---AGGTAACAGTAATGCGCCAAAGATGGGTCAGCAACTGAATCCACA 700 Query 716 ACATTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCC 775 |||| ||||||||||||| | | | |||||||||||||||||||||||||||||| Sbjct 701 ACATATGCAGCAGCTTCA---G----A-A-GATGAAAGGGTTTCAAGATCTGAAGCTTCC 751 Query 776 TCCTCAGTTAAAAGGCTCTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTCAAGTT 835 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 752 TCCTCAGGTAAAAGGCTTTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTGAAGTT 811 Query 836 TGATGTCCCtgaagatgatgatgatgatgatttcagtgacgaattcgatgatgaatttac 895 |||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 812 TGATGTTCCTGAGGATGATGATGATGATGATTTTAGTGACGAATTCGATGATGAGTTTAC 871 Query 896 tgatgatgatgacgacgagtttgatgatgagtttgacgatCTCCCTCTTCCGTCTAATAA 955 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 872 TGATGATGATGACGACGAGTTTGATGATGAGTTTGATGATCTCCCTCTTCCGTCTAATAA 931 Query 956 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAGAA 1015 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 932 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAAAA 991 Query 1016 GAATGCCAATCTTGCCGGTGGTCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGCTGG 1075 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 992 GAATGCCAATCTTGGCGGTGGCCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGGTGG 1051 Query 1076 CGGCGGCGGTGCCGGTGGTGGAAAGGGTGCTGGCGGCGGTGCTAAGGGTGGTCCTGGGAA 1135 |||||||||| | || ||||| | | | | | | || |||| ||||| Sbjct 1052 TGGCGGCGGTGGC--------AA-GGGTGGT--C--CTG-G-T--GG-TGGT---GGGAA 1090 Query 1136 TCAAAACCAAGGTGGAGGCAAGAACGGCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1195 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1091 TCAAAACCAAGGTGGAGGCAAGAACCCCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1150 Query 1196 CGGTGGAGGCGGTGGTCCCAACGCCGGAAAAAAGGGTAACGGCGGAGGTGGGCCCATGGC 1255 |||||| | || ||||||||||| |||||||||||||||||||||||||| || Sbjct 1151 CGGTGG------T---CCAAACGCCGGAAAGAAGGGTAACGGCGGAGGTGGGCCCATAGC 1201 Query 1256 TGGAGGAGTTTCGGGAGGTTTCCGACCCATGGGAGGTGGAGGACCACAGAATATGAGCAT 1315 ||||||| || |||| |||||||| || |||||||| |||||||||| ||| |||||||| Sbjct 1202 TGGAGGACTTCCGGGTGGTTTCCGTCCTATGGGAGGCGGAGGACCACCGAACATGAGCAT 1261 Query 1316 GCCAATGGGTGGTCAAATGGGTATGGGTGGTCCGATGGGGAATATGCCGGCGGTTCAGGG 1375 |||||||||| | ||||| || | ||||||||||||||||||||||||||||| Sbjct 1262 GCCAATGGGT----A--TGGGT--GG-T---CCGATGGGGAATATGCCGGCGGTTCAGGG 1309 Query 1376 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGATAGA 1435 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1310 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGCCAGA 1369 Query 1436 TCCTATGCAAATGCAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCA 1495 ||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1370 TCCTATGCAAATGCAGCAACAGCAA------------TATTTAGCAGCGGTTATGAACCA 1417 Query 1496 GCAACGAGCTATGGGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGC 1555 ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| Sbjct 1418 GCAACGAGCTATGGGGAACGAGCGGTTCCAACCAATGATGTACGCACGACCACCACCGGC 1477 Query 1556 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCC 1615 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1478 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTA-CC----C- 1531 Query 1616 GTACCCGTATCCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1675 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1532 GTA----T--CCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1585 Query 1676 CGAGAACACATCAAGCTGCGATATTATGTGAGATGGTTAAAAA-TCA-AAATAAAACTTT 1733 |||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 1586 CGAGAACACATCAAGCTGTGATATTATGTGAGATGGTTAAAAAATCTTAAATAAAACTTC 1645 Query 1734 TATAGTTTGTGTGTATTTGAATCCTAAGTTGGGGttttttt 1774 |||||||||||||| ||||||||||||||||| ||||||| Sbjct 1646 AATAGTTTGTGTGTAATTGAATCCTAAGTTGGGTTTTTTTT 1686 Score = 86.1 bits (46), Expect = 9e-16 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 1786 AATGCTAAGTTGTTGTAGGtttttttttt--tCACTTTGTGATAGCTTCGGTAATTTAAT 1843 ||| |||||||| || |||||||||| ||||||||||||||| ||||||||||||| Sbjct 1665 AATCCTAAGTTG-GGTTTTTTTTTTTTTTCCTCACTTTGTGATAGCATCGGTAATTTAAT 1723 Query 1844 AGAATAATATAAAAT 1858 ||||||||||||||| Sbjct 1724 AGAATAATATAAAAT 1738 > Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 Length=1689 Score = 206 bits (111), Expect = 6e-52 Identities = 213/261 (82%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 1449 CAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCAGCAACGAGCTATG 1508 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 1271 CAGCAACAACAACAACAACAACAATACTTAGCGGCGGTTATGAACCAGCAACGAGCCATG 1330 Query 1509 GGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGCAGTTAACTATATG 1568 || | |||||||||||| || ||||||||||| || |||||||| || || ||||||||| Sbjct 1331 GGCACCGAACGGTTCCAGCCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATG 1390 Query 1569 CCGCCA-AACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCCGTACCCGTATCC 1627 || ||| |||| ||||||| | | | ||| | |||||||| |||||||| || | || Sbjct 1391 CCACCACAACC-GCACCAACAAC--A-TCCATACCCGTATCCATATCCGTATCCACA-CC 1445 Query 1628 A-TATCCTCCAC-CTTATGGGAATGATCAATACTCTCATGCCTTTAGCGACGAGAACACA 1685 | ||||| || | | |||| ||| || || ||| || ||| | |||||||||||| Sbjct 1446 AGTATCCGCCTCACA-ATGG---TGACCAGTATTCTGATTACTTCAATGACGAGAACACA 1501 Query 1686 TCAAGCTGCGATATTATGTGA 1706 ||||||||| ||||||||||| Sbjct 1502 TCAAGCTGCAATATTATGTGA 1522 Score = 115 bits (62), Expect = 1e-24 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 699 CAGCAACTGAATCCACAACA-TTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTT 757 |||||| ||||||| || || || |||||||| ||||| |||||| ||||||||||||| Sbjct 599 CAGCAATTGAATCCTCAGCAGCTT-CAGCAGCTACAACAACTTCAGCAGATGAAAGGGTT 657 Query 758 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 787 |||||||||||||||||||||||||||||| Sbjct 658 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70047960555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5