BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06140.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317476 jgi|Araly1|317476|fgenesh1_pm.C_scaffold_3000492 1764 0.0
> Ahg317476 jgi|Araly1|317476|fgenesh1_pm.C_scaffold_3000492
Length=1665
Score = 1764 bits (955), Expect = 0.0
Identities = 1098/1164 (94%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 12 TCTCTCTGCTTC-TCACTGTTGTGCTTTCTGTCTTGTCTCTGTCTTTCCCATTGTCATTC 70
|||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 507 TCTCTCTGCTTCTTC-CTGTTCTGCTTTCTGTCTTGTCTCTTTCTTTCCCATTGTCATTC 565
Query 71 TCTCACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAAT---AATC 127
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 566 TCTCACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAATAACAATC 625
Query 128 GTCGCCACCTCCACCACTATCCTCCGCCGCCGCCTTACTATTACCTCGACcctcctcctc 187
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 626 GCCGTCACCTCCACCACTATCCT---CCGCCGCCTTACTATTACCTCGACCCTCCTCCTC 682
Query 188 ct---cctccGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 244
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CTCCGCCGCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 742
Query 245 CGCCTCTACCGCCACAGCCACAGATCAACTCTTGTTCTTACGGCCATTACCATTATCACC 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 743 AACCTCTACCGCCACAGCCACAGATCAACTCTTGTTCCTACGGCCATTACCATTATCACC 802
Query 305 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGCCCAATGATGAGAC 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 803 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGTCCAATGGTGAGGC 862
Query 365 CGGCGTACTACTGTCCGCCTCA---GC---CGCAAACGCAACCGC--CTA-AGCCATACC 415
||||||| ||| |||| ||||| || ||||||||||||||| | | |||||||
Sbjct 863 CGGCGTATTACGGTCCCCCTCAGCCGCAAACGCAAACGCAACCGCTTCCACCGCCATACG 922
Query 416 TGGAGCAACAGAACGCGAAGAAGGTGAGGAATGATGTCAATGTGCATAGAGATACAGTGA 475
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 923 TGGAGCAACAGAACGCGAAGAAGGTGAGGAACGATGTCAATGTGCATAAAGATACAGTGA 982
Query 476 GGCTTGAAGTGGACGATCTCGTTCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCTC 535
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 983 GGCTTGGAGTGGACGATCTCGTCCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCCC 1042
Query 536 TTTTCGACGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TTTTCGATGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 1102
Query 596 TCCCACAGTTTCCAGAGGTTTATTCACCCACAAGATTCCATTTTCAGAAAGGTCCTGGAC 655
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1103 TCCCGCAGTTTCCAGAGGTTTATTCACCGACAAGATTTCATTTTCAGAAAGGTCCTGGAC 1162
Query 656 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACTGACCTGAGCTTCTTTGTTCTTGATGATC 715
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 1163 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACAGACCTGAGCTTCTTTGCTCTTGACGATC 1222
Query 716 TGTCTAA-ACCCTTAGAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGATAATC 774
|||| || ||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1223 TGTC-AAGACCTTTACAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGGTAATC 1281
Query 775 TCTCCAAATTCAATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 834
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TCTCCTAATTCGATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 1341
Query 835 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTTGTGAAGCAGATTCTTTGGATTGAA 894
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1342 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTGGTGAAGCAGATTCTTTGGATTGAA 1401
Query 895 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGC 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGA 1461
Query 955 TTAGATGAGAGTGGTTCGGGTACAGAATGTGTTATCTGCATGACTGAGGCTAAGGACACG 1014
||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1462 TTAGAGGACAGTGGTTCGGGTAAAGAATGTGTGATCTGCATGACTGAGGCTAAGGACACG 1521
Query 1015 GCCGTGCTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1074
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 GCTGTACTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1581
Query 1075 CAGTCCAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAATG 1134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1582 CAGTCGAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAGTG 1641
Query 1135 AACAGTAGTGATGAACAACACTAG 1158
||||||||||||||||||||||||
Sbjct 1642 AACAGTAGTGATGAACAACACTAG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5