BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06150.1
Length=2188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477918 jgi|Araly1|477918|fgenesh2_kg.3__619__AT3G06150.1 3070 0.0
Ahg488789 jgi|Araly1|488789|fgenesh2_kg.6__1923__AT5G19060.1 1110 0.0
Ahg926144 jgi|Araly1|926144|scaffold_201705.1 359 5e-98
Ahg944013 jgi|Araly1|944013|scaffold_700242.1 353 3e-96
Ahg937275 jgi|Araly1|937275|scaffold_501466.1 353 3e-96
> Ahg477918 jgi|Araly1|477918|fgenesh2_kg.3__619__AT3G06150.1
Length=2142
Score = 3070 bits (1662), Expect = 0.0
Identities = 1998/2153 (93%), Gaps = 51/2153 (2%)
Strand=Plus/Plus
Query 45 AAAAATCTAAGACTTTTTAATCCTCCCTTGTCTTCTGGAAA--TCTGGGAGGATTTTAAG 102
||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 23 AAAAATCAAAGACTTTTTAATCCTCCCTTCTCTTCTGGAAATTTTTGGGAGGATTTTAAG 82
Query 103 GTTCTTCTTGTCCaaaaattaaaaaaaTTGCCAATTGTGGATTGTGTATCATTCATTGTC 162
||||||||||||||| || |||||||| ||| ||||||||||||| ||||||||||||
Sbjct 83 GTTCTTCTTGTCCAAGAA-TAAAAAAACTGCTAATTGTGGATTGTTTATCATTCATTG-- 139
Query 163 ATCATCTAATCTTCTTCTTCTTCTACTTACGAGTTTGGAGAAGTTATCCGCCATTGAAGC 222
|| | || | |||||||||||||||||||||| | |||||||
Sbjct 140 ----TC--A------------TC-A--TACGAGTTTGGAGAAGTTATCCATCGTTGAAGC 178
Query 223 ATTTAAAATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTT 282
||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 179 ATTTAGAATGCCGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTT 238
Query 283 ACGGCCAAGCCCTCTTCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCT 342
||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 239 ACGGCCAAGCCCTCTGCTTCAATGGCGGCTTGGTGCTCTTACTGCACTCGTCTTCTTCCT 298
Query 343 TATGTTAGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAG 402
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 CATGTTAGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAG 358
Query 403 ATTCAATGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTT-ATGTCAACGAAAC 461
||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 359 ATTCAATGCATACTCTGTTCGAATCAGTCCTTCTCCGTCGCC-TTTAATGTCACCGAAAC 417
Query 462 CCAATCTAGTATCAGAGAAACCTCACCGCCAAAATCTCACCTT------GATGATGGCTC 515
||||||||||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct 418 CCAATCTAGTATCAGAGAAACCTCACCGCCAAAATCTTACTTTGAAGACGACGATGGTTC 477
Query 516 CACGAAATCTGGTTCCGAAGAAGACGAATCTCACTTCAAACTCGACCCGGGTCCAGTTCG 575
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 478 CACGAAATCTGGTTCCGAAGAAGACGAATCTCACTTCAAACTTGACCCGGGTCCAATTCG 537
Query 576 AGTGGATAACCGCTGGATCT-CAGAAGAATTTCACGGCGAATTTGATGAGAGGTTGGTTG 634
|||||| |||| | || | |||||||||||||| ||||||||||||||| |||||||
Sbjct 538 GGTGGATTGCCGCCGAAT-TGCAGAAGAATTTCACTGCGAATTTGATGAGAAATTGGTTG 596
Query 635 GCTCCGGGAGGAGCGCCGTGTAGAGAAGCGAAGACCGTCGAGATTTCAGTTCCCGGTGTC 694
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||
Sbjct 597 GCTCCGGGAGGAGCGCCGTGCAGAGAAGCGAAAACCGTCGAGATTTCAGTTGCCGGCGTC 656
Query 695 GACGGGATTGATTCTGTGGAGTTAACCGCCGGAGAGATTCATGAATTCAAATTTCAAGCC 754
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 GACGGGATTGATTCGGTTGAGTTAACCGCCGGTGAGATTCATGAATTCAAATTTCAAGCC 716
Query 755 ATAGACGAATCTGGAAAAAACGTTTGCATTGGTGGGGACTATTTCGAGACTGATATATCC 814
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 ATAGACGAATCTGGAAAACACGTTTGCATTGGTGGGGACTATTTCGAGACTGATTTATCC 776
Query 815 GGCGAGAACTGGAAATCGAGACCACCGGTGAAAGATTTCGGCAACGGAACTTACTCTTTC 874
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 777 GGCGAGAATTGGAAATCGAGACCGCCGGTGAAAGATTTCGGTAACGGAACTTACTCTTTC 836
Query 875 TCTTTACAGGTTCATCCTGAGTTCGCCGGAGATT-TCAATCTCACCGTCATTTTACTCTT 933
|| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 837 TCGTTACAGGTTCATCCTGAGTTCGCCGGAGATTAT-AATCTCACCGTCATTTTGCTCTT 895
Query 934 CCGTCATTACCAAGGTCTTAAGTTTAGTACCTCACGTTTAGGCTTTGACCGAAAGCTTCG 993
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 896 CCGTCATTACCAAGGTCTTAAGTTCAGTACCTCACGTTTAGGCTTTGACCGAAAGCTTCG 955
Query 994 CAATGTTAGATTACGCTTTGTTAAGACGCCTGACGTTACTCTGCCGGAGCTCCGGTCATG 1053
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 956 CAATGTTAGATTACGCTTCGTCAAGAAGCCTGACGTTACTCTGCCGGAGCTCCGGTCATG 1015
Query 1054 TAAAAAATCTGATTTTAACAGAGATGCTTGGTCTGGACGATGGACTAGGCTTGGGAAGAA 1113
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||
Sbjct 1016 TAAAAAATCTGATTTTAACAGAGCTGCTTGGTCCGGACGGTGGACTAGGCTTGGCAAGAA 1075
Query 1114 TGATGAGTGTCAGATTAGCAATGACGGGCGTTACCGCTGCCTCGCTGCGGATTTCCCTTG 1173
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1076 TGATGAGTGTCAGATCAGCAATGACGGCCGTTACCGCTGCCTCGCTGCGGATTTTCCTTG 1135
Query 1174 CCGGAAACCGTGGTGCGACGGTGCGGTTGGAGCTATAGAGAGTAATGGTTGGGTTTACTC 1233
||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 1136 CCGGAAACCGTGGTGCGACGGAGCGGTTGGAGCGATAGAGAGCAATGGGTGGGTTTACTC 1195
Query 1234 TAGCCATTGCTCTTTCAAGCTCTTCTCT-GCGGAAAAGGCTTGGGATTGCTTGAAAGGCA 1292
|| |||||||| ||||||||||||||| || || ||||||||||||||||||||| ||
Sbjct 1196 GAGTCATTGCTCCTTCAAGCTCTTCTCTGGC-GATAAGGCTTGGGATTGCTTGAAAAACA 1254
Query 1293 AATGGATTTTCTTCTGGGGAGATTCGAATCATGTTGATTCGATCAGAAACTTGCTGAATT 1352
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1255 AATGGATTTTCTTCTGGGGAGATTCGAATCATGTCGATTCGATCAGAAATTTGCTGAATT 1314
Query 1353 TCGTCTTGGGTCATCCTGAAATCCCCGCTGTCCCGAGGAGGTTCGATATGAAGTTTTCGA 1412
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1315 TCGTCTTGGGTCATCCGGAAATCCCCGCTGTCCCGAGGAGATTCGATATGAAGTTTTCGA 1374
Query 1413 ATCCGAAGAACCCTTCGGAGACTGTTAGGATCACGAGTATCTTT-AACGGTCATTGGAAC 1471
|||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1375 ATCCAAAGAACCCATCGGAGACTGTTAGGATCACGAGTAT-TTTCAACGGTCATTGGAAC 1433
Query 1472 GAGACCAAGAACTATCAGGGCCTTGATTCGCTTAAAGACAGGGACTTTAGAGAATTGCTC 1531
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1434 GAGACCAAGAACTACCAGGGCCTTGATTCGCTCAAAGACAGGGACTTTAGAGAATTGCTC 1493
Query 1532 AAGAAGTACTTCAAC-GAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGG 1590
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AAGAAATACTTC-ACGGAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGG 1552
Query 1591 TCTACACGACGGGATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGC 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TCTACACGACGGGATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGC 1612
Query 1651 AGCTGCGTTTTGGAGAGA-AGTTTTTGACGGGGTCAAAAGCAGAGGATTGCAACCGCCAG 1709
|||||| ||||||||||| | | ||||| |||||||||||||| ||||||||||||||||
Sbjct 1613 AGCTGCATTTTGGAGAGATA-TATTTGATGGGGTCAAAAGCAGGGGATTGCAACCGCCAG 1671
Query 1710 AAGTGATTTTCAGGAACACAATCGCGACAGGCGGGTACGCGAGAATGCTAGCGTTTAACC 1769
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1672 AAGTGATTTTCAGGAACACAATCGCGACAGGCGGTTACGCGAGAACGCTAGCGTTTAACC 1731
Query 1770 CGAGCAAAATGGAGGCGTTTAACGGAGTGTTTCTCGAGAAAATGAGGGATGCGGGATTGG 1829
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1732 CGAGTAAAATGGAGGCTTTTAACGGAGTGTTTCTCGAGAAAATGAGGGACGCGGGATTGG 1791
Query 1830 TCACGAGCGTAGTTGATAACTTCGATATGACGTATCCGTGGCACTACGATAACCGTTGCA 1889
|||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1792 TCACAAGCGTAGTTGATAACTTCGATATGACGTATCCGTGGCATTATGATAACCGGTGCA 1851
Query 1890 ACGATGGAGTTCATTACGGAAGAGCTCCAGCGAAAATGCGGTGGAGGGACGGTGAGATTG 1949
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1852 ACGATGGAGTTCATTATGGAAGAGCTCCGGCAAAAATGCGGTGGAGGGACGGTGAGATCG 1911
Query 1950 GACATCAGTACTTTGTGGACTTGATGCTCGTTCACGTATTGCTGAATGCATTGTGTGTAA 2009
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GACATCAGTACTTTGTGGATTTGATGCTCGTTCACGTATTGCTGAATGCATTGTGTGTAA 1971
Query 2010 GATAGATGTGGTAAAGTTTGGTAATTAGGAAGA-G--TCACGGATTCTTTGTTTATGTGT 2066
||||||| |||||||||||| | ||||||||| | ||||||||||||| |||||||||
Sbjct 1972 GATAGATATGGTAAAGTTTGTT--TTAGGAAGACGAGTCACGGATTCTTTATTTATGTGT 2029
Query 2067 AGACTTAAtttttttGAAGTATAGATTATTATTATTTGGGAAAACTCAACTCAAGCTTGA 2126
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2030 AGACTTAATTTTTTTGAAGTATAGATTATTATTATTTGCGAAAACTCAACTCAAGCTTGA 2089
Query 2127 GTTATATTGTATAATAGCAAGAGATTGGAGCAACAATAGTGTACTATATGTAT 2179
||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2090 GTTTTATTGTATAATAGCAAGAGATTGGAGCAACACTTGTGTACTATATGTAT 2142
> Ahg488789 jgi|Araly1|488789|fgenesh2_kg.6__1923__AT5G19060.1
Length=1830
Score = 1110 bits (601), Expect = 0.0
Identities = 1175/1446 (81%), Gaps = 63/1446 (4%)
Strand=Plus/Plus
Query 600 AGAATTTCACGGCGAATTTGA-TGAGAGGTTGGTTGGCTCCGGGAGGAGCGCCGTGTAGA 658
|||| |||||||||||| | | ||| | ||| | ||||||||||||| | ||| |||
Sbjct 335 AGAACTTCACGGCGAATGT-ACTGAAAAACTGGCTAGCTCCGGGAGGAGAGAAGTGCAGA 393
Query 659 GAAGCG-AAGACCGTCGAGATTTCAGTTCCCGGTGTCGACGGGATTGATTCT-GTGGAGT 716
|||| | |||||||||||||||| ||||| || ||||||||| |||| | || ||||
Sbjct 394 GAAG-GAAAGACCGTCGAGATTTTTGTTCCGGGAATCGACGGGAAGGATT-TAGTAGAGT 451
Query 717 TAACCGCCGGAGAGATTCATGAATTCAAATTTCAAGCCATAGACGAATCTGGAAAA-AAC 775
|||| || || |||||||| ||||||| ||||||| | |||| || ||||||||| |
Sbjct 452 TAACGGCTGGTGAGATTCACGAATTCAGATTTCAATCTTTAGATGATTCTGGAAAACGA- 510
Query 776 GTTTGCATTGGTGGGGACTATTTCGAGACTGATATATCCGGCGAGAACTGGAAATCGAGA 835
||||| || ||||| || || ||||| |||||| | ||||| || ||||||||||| |||
Sbjct 511 GTTTGTATCGGTGGAGATTACTTCGAAACTGATCTTTCCGGTGAAAACTGGAAATCAAGA 570
Query 836 CCACCGGTGAAAGATTTCGGCAACGGAACTTACTCTTTCTCT-TTACAGGTTCATCCTGA 894
||||||||| ||||||| || ||||||||||||||||| ||| || ||| ||||||||||
Sbjct 571 CCACCGGTGGAAGATTTAGGAAACGGAACTTACTCTTTATCTCTT-CAGATTCATCCTGA 629
Query 895 GTTCGCCGGAGATT-TCAATCTCACCGTCATTTTACTCTTCCGTCA-TTACCAAGGTCTT 952
||||||||||||| | |||||||| || |||||||||||||||| || ||||||||||
Sbjct 630 TTTCGCCGGAGATTAT-AATCTCACTGTTGTTTTACTCTTCCGTCACTT-CCAAGGTCTT 687
Query 953 AAGTTTAGTACCTCACGTTTAGGCTTT-GACCGAAAGCTTCGCAATGTT-AGATTACGCT 1010
|| |||||| || | || || ||||| || |||||| || ||| || | | |||| |
Sbjct 688 AAATTTAGTCCCGCGCGCTT-CGCTTTCAACAAAAAGCTACGGAAT-TTCAAACTACGGT 745
Query 1011 TTGTTAAG-ACGCCTGACGTTACTCTGCCGGAGCTCCGGTCATGTAAAAAATCTGATTTT 1069
|| ||||| || || |||||| | | |||||||| ||| |||| | || |||||
Sbjct 746 TTATTAAGAAC-CCCGACGTTGTTTTACCGGAGCTTCGGAGATGTGATCGGTCCGATTTC 804
Query 1070 AACAGAGATGCTTGGTCTGGACGATGGACTAGGCTTGGGAAGAATGATGAGTGTCAGATT 1129
||||||||| |||||| ||||| |||| ||||||||| ||||| || |||||| | ||
Sbjct 805 GACAGAGATGTTTGGTCCGGACGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATC 864
Query 1130 AGCAATGACGGGCGTTACCGCTGCCT-CGCTG-CGGATTTCCCTTGCCGGAAACCGTGGT 1187
||||| ||||| |||||||| ||| | | | | || ||||| |||||||||||| ||||
Sbjct 865 AGCAACGACGGTCGTTACCGTTGCTTAC-CGGATGG-TTTCCGTTGCCGGAAACCATGGT 922
Query 1188 GCGACGGTGCGGT-T-GGAGCTATAGAGAGTAATGGTTGGGTTTACTCTAGCCATTGCTC 1245
||||||| || | | |||| | |||| || || |||||||||||||| || ||||||||
Sbjct 923 GCGACGGAGCTTTATCGGAG-T-TAGAAAGCAACGGTTGGGTTTACTCGAGTCATTGCTC 980
Query 1246 -TTTCAAGCTCTTCTCTGCG-GAA-AAGGCTTGGGATTGCTTGAAAG-GCAAATGGATTT 1301
||| ||||||||||||| | ||| | ||||||||||| ||| ||| |||||||||||
Sbjct 981 GTTT-AAGCTCTTCTCTG-GTGAATCA-GCTTGGGATTGTTTG-AAGAACAAATGGATTT 1036
Query 1302 TCTTCTGGGGAGATTCGAATCATGTTGATTCGATCAGAAACTTGCTGAATTTCGTCTTGG 1361
||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1037 TCTTCTGGGGAGACTCTAATCATGTTGATTCGATCAGAAACTTGTTGAATTTTGTCTTGG 1096
Query 1362 GTCATCCTGAAATCCCCGCTGTCCCGAGGAGGTTCGATATGAAGTTTTCGAATCCGAAGA 1421
||||||| || ||| || || || |||||||| ||| ||||||| |||||||||||||
Sbjct 1097 GTCATCCAGAGATCGGGGCCGTGCCAAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGA 1156
Query 1422 ACCCTTCGGAGACTGTTAGGATCACGAGTATCTTT-AACGGTCATTGGAACGAGAC-CAA 1479
|| | ||||| || ||||||||||||||||| ||| || || |||||||||||||| |||
Sbjct 1157 ACTCATCGGAAACAGTTAGGATCACGAGTAT-TTTCAATGGACATTGGAACGAGACACAA 1215
Query 1480 GAACTATCAGGGCCTTGATTCGCTTAAAGA-CAGGGACTTTAGAGAATTGCTCAAGAAG- 1537
|||||||| || |||||||| |||||||| | || ||||||||||||||| || |||
Sbjct 1216 -AACTATCAAGGTCTTGATTCACTTAAAGATGATGG-CTTTAGAGAATTGCTTAA-AAGC 1272
Query 1538 TACTTCAACGAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGGTCTACAC 1597
|| ||| |||||| || | |||| || |||||||||||||| |||||||||||||||
Sbjct 1273 TATTTCGCCGAAGAGAC---CGGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACAC 1329
Query 1598 GACGG-GATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGCAGCTGC 1656
||||| | |||||||| ||| |||||||||||| ||||||| || |||||||| ||| |
Sbjct 1330 GACGGTG-TTCACTGGTCTAACCTTAGAGCCTTTACGAAAGGAGCAGAAACCGCGGCT-C 1387
Query 1657 -GTTTTGGAGAGAA-GTTTTTGACGGGGTCAAAAG-CAGAGGATTGCAACCGCCAGAAGT 1713
||| |||||| || ||||| ||| ||| |||| | | ||||||||||| || |||||
Sbjct 1388 GGTTCTGGAGA-AACGTTTTCGACTCGGT-GAAAGCCCGCGGATTGCAACCTCCGGAAGT 1445
Query 1714 GATTTTCAGGAACACAATCGCGACAGGCGGGTACGCGAGAATGCTAGCGTTTAACCCGAG 1773
| |||| |||||||| |||||||| || || |||||||| | ||| ||||||||||| ||
Sbjct 1446 GGTTTTTAGGAACACGATCGCGACGGGTGGTTACGCGAGGACGCTTGCGTTTAACCCAAG 1505
Query 1774 CAAAATGGAGGCGTTTAACGGAGTGTTTCTCGAGAAAATG-AGGGATGCGGGATTGGTCA 1832
||| ||||| | || || || |||||| | ||||||||| |||| | |||||||||
Sbjct 1506 CAAGATGGAAGTGTACAATGGGGTGTTTTTGGAGAAAATGAAGGGGT-TAGGATTGGTCT 1564
Query 1833 CGAGCGTAG-TTGATAACTTCGATATGACGTATCCGTGGCACTACGATAACCGTTGCAAC 1891
|||| || | ||||||||||||||||||||||||||||||| | |||||||| || |||
Sbjct 1565 CGAGTGT-GATTGATAACTTCGATATGACGTATCCGTGGCATTTTGATAACCGGTGTAAC 1623
Query 1892 GATGGAGTTCATTACGGAAGAGCTCCAGCGAAAATGCGGTGGAGGGACGGTGAGATTGGA 1951
|| || ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1624 GACGGGGTTCACTATGGGAGAGCTCCGGCGAAGATGCGGTGGAGAGACGGCGAGATTGGG 1683
Query 1952 CATCAGTACTTTGTGGA-CTTGATGCTCGTTCACGTATTGCTGAATGCA-TTGTGTGTAA 2009
|||||||||||||| || || ||||| ||||| || ||| | |||||| || |||||||
Sbjct 1684 CATCAGTACTTTGTTGATCTC-ATGCTTGTTCATGTCTTGTTAAATGCAATT-TGTGTAA 1741
Query 2010 GATAGA 2015
||||||
Sbjct 1742 GATAGA 1747
> Ahg926144 jgi|Araly1|926144|scaffold_201705.1
Length=409
Score = 359 bits (194), Expect = 5e-98
Identities = 224/238 (94%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 230 ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA 289
|||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 21 ATGCTGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA 80
Query 290 AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT 348
| |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 81 AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT 139
Query 349 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAGATTCAA 408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 140 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAGATTCAA 199
Query 409 TGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTTA-TGTCAACGAAACCCAA 465
||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 200 TGCATACTCTGTTCGAATCAGTCCTTCTCCGTCGCC-TTTAATGTCACCGAAACCCAA 256
> Ahg944013 jgi|Araly1|944013|scaffold_700242.1
Length=409
Score = 353 bits (191), Expect = 3e-96
Identities = 223/238 (94%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 230 ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA 289
|||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 21 ATGCTGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA 80
Query 290 AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT 348
| |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 81 AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT 139
Query 349 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAGATTCAA 408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 140 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAGATTCAA 199
Query 409 TGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTTA-TGTCAACGAAACCCAA 465
||| |||||||||||||||||||||||||||||||| |||| ||||| | ||||||||
Sbjct 200 TGCATACTCTGTTCGAATCAGTCCTTCTCCGTCGCC-TTTAATGTCACCAAAACCCAA 256
> Ahg937275 jgi|Araly1|937275|scaffold_501466.1
Length=598
Score = 353 bits (191), Expect = 3e-96
Identities = 223/238 (94%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 230 ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA 289
||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 210 ATGCCGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA 269
Query 290 AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT 348
| |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 270 AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT 328
Query 349 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAGATTCAA 408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 329 AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAGATTCAA 388
Query 409 TGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTTA-TGTCAACGAAACCCAA 465
||| |||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||
Sbjct 389 TGCATACTCTGTTCGAATCAGTCCTTTTCCGTCGCC-TTTAATGTTACCGAAACCCAA 445
Score = 187 bits (101), Expect = 3e-46
Identities = 120/129 (93%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 230 ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA 289
|||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 21 ATGCTGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA 80
Query 290 AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT 348
| |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 81 AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT 139
Query 349 AGTCGTTTG 357
|||||||||
Sbjct 140 AGTCGTTTG 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82351109690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5