BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06160.2
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494 1149 0.0
Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500 436 1e-121
> Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494
Length=1026
Score = 1149 bits (622), Expect = 0.0
Identities = 884/1003 (88%), Gaps = 47/1003 (5%)
Strand=Plus/Plus
Query 216 GTTCATACGTCTTCCATGGCTTCCGGTGATGTTCTTCCTAGATTCTTCACTGTCTTCCTC 275
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 31 GTTCATACGTCTTCCATGGCTTCCAGTGATGTTCTTCCTCGATTCTTCACTGTTTTCCTC 90
Query 276 TCCCATTGCAGCTCCGAATCCATGGTGATACCAAGGTCTTACTAC-AATCTTTTACCACG 334
||||| | ||||||||||||||||||||||||| | ||||||||| || | |||||||||
Sbjct 91 TCCCAGTACAGCTCCGAATCCATGGTGATACCACGTTCTTACTACGAA-CATTTACCACG 149
Query 335 TCCGTTGCCCAAGACTGCGATTCTCATCGGAACTGGTGGAAGATTTTGGAAAGTAGCAAT 394
|| ||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 150 TCGGTTGCCCAAAACTGCCATTCTCGTGGGAACTGGTGGAAGATTTTGGAAAGTAGCAAT 209
Query 395 GACGAGCAAGCAAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTTGCTGATAA 454
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 210 GACGAGCAGGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCTGATAA 269
Query 455 CCAGTTAAAAGAGGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGT 514
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CGAGTTAAAAGATGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGT 329
Query 515 AAGTATCTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGAT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AAGTATCTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGAT 389
Query 575 CTCTGATGA---TACAGAAGATGACAACGTTTCTCTTCATAGCCCTAGCAATGTTTCACT 631
||||||||| |||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct 390 CTCTGATGACGATACAGAAGATTACAGCGTTTCTCTTCATAGCTTTAACAACGTTTCGCT 449
Query 632 TGATAGCCTT-AGCAACGATTCTCATCA---T-A-GC--AC-TAGCA-A-CGTTTCTCTT 680
| |||||||| | ||| ||||||| ||| | | | | ||| | | || |||||||
Sbjct 450 TCATAGCCTTGA-CAATGATTCTCTTCAGGCTGATGTTGAGATAG-AGAGCGATTCTCTT 507
Query 681 CGAAGCCT--T----AGC-A-A---CGATTCTCTTCATGGT-GATGCTGAGATAGAGAGC 728
||| || | || | | |||||||||||| ||| ||||||||||||||||||
Sbjct 508 --AAGGCTGATGTTGAGATAGAGAGCGATTCTCTTCA-GGTTGATGCTGAGATAGAGAGC 564
Query 729 GACAGTGAGTATTCTCCCGAGAACCTACCCTCAGCCTCTATATCTGTTGAATCCGTTGAG 788
|| ||||| |||||||||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 565 GATAGTGACTATTCTCCCGAGAACCCGGACACAGCCTCTACCTCTGTTGAATCTGTTGAG 624
Query 789 GTGGTGAATCCAACAACAAGCA-G----GCAG--AGA-A-GTTACAAGAGGAAGACCATT 839
|||||||||||||||||||||| | |||| ||| | ||||||||| ||||||||||
Sbjct 625 GTGGTGAATCCAACAACAAGCATGACAAGCAGGCAGAGAAGTTACAAGAAGAAGACCATT 684
Query 840 GAGAATCCACATCTGTATTTGGATGATCCAAACAATGTCTGTTTTGAGACGTGTCTTAAG 899
||||||||| | || ||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 685 GAGAATCCAGAACTATATTTGGATGATCCAAACAATATTTGCTTTGAGACGTGTCTTAAG 744
Query 900 CTTAGAAAGTTTGAGCTGTTAGTTCATGCACAGTTGGTGAAAGACTACGGCTTGATATTC 959
|||||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||
Sbjct 745 CTTAGAAAGTTTGAGCTGTTAGTTGATGCGCAGTTTGTGAAAGACTACAGCTTGAAATTC 804
Query 960 AGCGACAATGTTGACTATATTGACGGATATGGAAAACTAACCGCGAAAACGACCAAGTGG 1019
||||||| ||||||||||| ||||||||||||||||||||||||| || ||| || |||
Sbjct 805 GGCGACAAGGTTGACTATATCGACGGATATGGAAAACTAACCGCGACAATGACGAAATGG 864
Query 1020 GCAGATCAACGGGTTTGCATAAACAAATGGCAGAAAATATGCGAGAGAAACCAGTTC-AC 1078
||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||| ||
Sbjct 865 GCAGATCAACGTGTTTGCATAAAGAAGTGGCAGAAAATATGCGATAGAAAC-AGTTTGAC 923
Query 1079 AGAGAATGACTCCATCCTATGTGAAATTCTCCGCAACGAGGACAAAGTGGTTTATGCAAT 1138
|||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 924 AGAGAATGACTCCATCTTATGCGAAGTTCTCCGCAACGAAGACAAAGTGGTTTATGCAAT 983
Query 1139 CAAGATTCACATCTTCCGCGATGCAGCAGCA---AGCACTTGA 1178
|||||||||||||||||| |||||||||||| |||||||||
Sbjct 984 CAAGATTCACATCTTCCGTGATGCAGCAGCAGCTAGCACTTGA 1026
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 54 ATGTGGGCAACGAAGTCGCGTCGGTGTGCCGT 85
||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGGCAACGAAGTCGCGTCGGTGTGCCGT 32
> Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500
Length=528
Score = 436 bits (236), Expect = 1e-121
Identities = 346/396 (87%), Gaps = 19/396 (5%)
Strand=Plus/Plus
Query 231 ATGGCTTCCGGTGATGTTCTTCCTAGATTCTTCACTGTCTTCCTCTCCCATTG-CAGCTC 289
||||||||||||||||| |||||| | |||| ||||||||| || | ||| || ||| ||
Sbjct 1 ATGGCTTCCGGTGATGTACTTCCTCGTTTCTACACTGTCTTTCT-TTCCAATGTCAGTTC 59
Query 290 CGAA-TCCATG--G-TGATACCAA-GGTCTTACTAC-AATCTTTTACCACGTCCGTTGCC 343
| || || || | ||||||||| ||| ||||||| || | |||||| |||| ||||||
Sbjct 60 C-AACTCTTTGAAGCTGATACCAAGGGT-TTACTACGAA-CATTTACCGCGTCGGTTGCC 116
Query 344 CAAGACTGCGATTCTCATC-GGAACTGGTGGAAGATTTTGGAAAGTAGCAATGAC-GAGC 401
||| || |||||||||| | ||||||||||||||||||||||||||||||||| | ||||
Sbjct 117 CAAAACAGCGATTCTCA-CGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATG-CTGAGC 174
Query 402 AAGCAAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTTGCTGATAACCAGT-T 460
|||| ||||||||||||||||||||||||||||||||||||||| || |||||| | | |
Sbjct 175 AAGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCGGATAACGA-TCT 233
Query 461 AAAAGAGGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTAT 520
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAAAGATGGAGAGTTCTTGACGTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTAT 293
Query 521 CTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGATCTCTGA 580
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 294 ATATGGTCGCGGAGAATGCAAAGAGACACGAGCAGTCATTCAAGTTGAAGAGATCTCTGA 353
Query 581 TGATACAGAA-GATGACAACGTTTCTCTTCATAGCC 615
||| |||||| | |||||||| ||||||| |||||
Sbjct 354 TGAGACAGAAAG-TGACAACGATTCTCTTGGTAGCC 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5