BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06180.1

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928241 jgi|Araly1|928241|scaffold_300698.1                       1096    0.0  


> Ahg928241 jgi|Araly1|928241|scaffold_300698.1
Length=700

 Score = 1096 bits (593),  Expect = 0.0
 Identities = 678/716 (95%), Gaps = 17/716 (2%)
 Strand=Plus/Plus

Query  49   AACATTCCACCACCAATAGCATGCCCccttcctcctccgcctctagatccgcctccaatc  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    AACATTCCACCACCAATAGCATGCCCCCTTCCTCCTCCGCCTCTAGATCCGCCGCCAATC  60

Query  109  acagctcctcttcctcctcctcctcctcctctctccacctctgcaagcactctccttccg  168
            ||||               |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACAG---------------CTCCTCCTCCTCTCTCCACCTCTGCAAGCACTCTCCTTCCG  105

Query  169  cgactctcgacctcctcatcctaatcctcgtcctcttctccggcgctttcctcctctcct  228
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  106  CGACTCTCGACCTCCTAATCCTAATCCTCGTCCTCTTCTCCGGCGCTTTCCTCCTCTCCT  165

Query  229  cttacttctcctatctcttccactccttttctctcctctcctctcacttcccttccctct  288
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  166  CTTACTTCTCCTATCTATTCCACTCCTTCTCTCTCCTCTCCTCTCACTTCCCTTCCCTCT  225

Query  289  cctccttgatcttctccgacgatgaagatctctcct-cGATCCCTCCCGCTTCCTACTTC  347
            ||||||||||||||||||||||||||||||| | || | |||||||| || |||||||||
Sbjct  226  CCTCCTTGATCTTCTCCGACGATGAAGATCTAT-CTCCAATCCCTCCGGCGTCCTACTTC  284

Query  348  TTCGCCTTCGCCGTCTTCTTCGCCGCTTCAATTGCGTTTCTCGACCTTTGTTGTGGACCC  407
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  285  TTCGCCTTCGCCGTCTTCTTCGCCGCTTCGATTGCGTTTCTCGACCTATGTTGTGGACCC  344

Query  408  AGATCGAGGAAGTGTCGGAATCCCAAGTGTAAAGGTTTGAAGAAAGCGATGGAGTTTGAT  467
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  345  AGATCGAGGAAGTGTAAGAATCCCAAGTGTAAAGGTTTGAAGAAAGCGATGGAGTTTGAT  404

Query  468  TTGCAATTGCAGACGGAGGAATGTGTTAAATCTGGAGCTACTAAGGAGATCGATCGATTG  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  TTGCAATTGCAGACGGAGGAATGTGTTAAATCTGGAGCTACTAAGGAGATCGATCGATTG  464

Query  528  CCATGGAAAGGAGGTAGTGAGAGCAATCCTGATTACGAGTGTTTGAGGGCTGAGCTTAGA  587
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  465  CCATGGAAAGGAGGAAGTGAGAGCAATCCTGATTACGAGTGTTTGAGGGCTGAGCTTAGA  524

Query  588  AGGATGGCTCCGCCTAATGGTCGTGCTGTTTTACTTTTCCGATCTAGATGTGGTTGCCCT  647
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  525  AGGATGGCTCCGCCTAATGGCCGTGCTGTTTTACTTTTCCGATCTAGATGTGGTTGCCCT  584

Query  648  GTTGCTAAGCTTGAAGGTTGGGGTCCTAAACGAGGCCGGCGTCATAAAAAATCGCAAGCG  707
            || ||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  585  GTCGCTAAGCTCCAAGGTTGGGGACCTAAACGAGGCCGCCGTCATAAAAAATCGCAAGCG  644

Query  708  AACTTGGCTCTGAAGGGAGGGGTCGACCATCGCTGATCAGGTCGATAGGAACTCTT  763
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  645  AACTTGGCTCTAAAGGGAGGGGTAGACCATCGCTGATCAGGTCGATAGGAACTCTT  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35644927395


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5