BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06190.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928242 jgi|Araly1|928242|scaffold_300699.1 2106 0.0
Ahg488784 jgi|Araly1|488784|fgenesh2_kg.6__1918__AT5G19000.1 998 0.0
> Ahg928242 jgi|Araly1|928242|scaffold_300699.1
Length=1261
Score = 2106 bits (1140), Expect = 0.0
Identities = 1222/1262 (97%), Gaps = 3/1262 (0%)
Strand=Plus/Plus
Query 319 TTGGATCTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCAAGGAGGTTCCTGGATCTT 378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTGGATCTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCACGGAGGTTCCTGGATCTT 60
Query 379 CGAAATCGACCGCACAGTCGCTCACGGAGTCGACCTCTCGCACGGAAACCATCAATGGCT 438
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CGAAATCGACCTCACAGTCGCTCACGGAGTCGACTTCTCGCACGGAAACCATCAATGGCT 120
Query 439 CCCACGAATTCAAGATCAGCGGCTACTCTTTGGTCAAAGGCATGGGGATTGGCAAATACG 498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CCCACGAATTCAAGATCAGCGGCTACTCTTTGGTCAAAGGGATGGGGATTGGCAAATACG 180
Query 499 TTGCCTCGGATACTTTCATGGTCGGTGGATACTCCTGGGCCATCTACTTCTACCCAGATG 558
||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 181 TTGCCTCGGATACGTTCATGGTTGGTGGCTACTCTTGGGCGATCTACTTCTACCCAGATG 240
Query 559 G-AAAGAGTCCAGAGGATAATTCTGTCTACGTGTCTCTCTTCATAGCCCTTGCGAGTGAA 617
| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 241 GTAAA-AGTCCAGAGGATAATTCTGTGTACGTGTCTCTCTTCATAGCCCTCGCGAGCGAA 299
Query 618 GGAGCCGATGTTAGGGCTTTGTTTGAGCTTACCCTCGTGGATCAGAGCGGTAACGAAAGG 677
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 GGAGCCGATGTTAGGGCTTTGTTTGAGCTCACCCTCGTGGATCAGAGCGGTAACGAAAGG 359
Query 678 CACAAAGTTCATAGCCATTTTGGTAGAACTCTCGAAAGCGGACCCTATACTCTTAAATAT 737
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 CACAAGGTTCATAGCCATTTTGGTAGAACTCTAGAAAGCGGACCCTATACTCTTAAATAT 419
Query 738 CGAGGGAGTATGTGGGGATACAAACGATTTTTCAAGAGGTCTCTTTTGGAGTCATCGGAC 797
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 CGAGGAAGTATGTGGGGATACAAACGTTTTTTCAAGAGGTCTCTTTTGGAGTCATCGGAC 479
Query 798 TATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGAAGTCACGCACA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTGAAGTCACGCACA 539
Query 858 GAAGGACCGAGGTGTTACAATATCCCGGTGCCGGTTTCTGGCTTGGGTCAGCAGTTTGGA 917
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GAAGGACCAAGGTGTTACAATATCCCGGTGCCGGTTTCTGACTTGGGTCAGCAGTTTGGA 599
Query 918 AAGCTTTTGGAAAGTGGGAAAGGAGCTGACGTTACTTTCGAAGTTGATGGAGAAACATTT 977
||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 600 AAGCTTTTGGAAAGTGGGAAAGGAGCTGATGTTAATTTCAAAGTTGATGGAGAAACATTT 659
Query 978 CCTGCTCACAAATTGGTTCTTGCAGCACGTTCTGCAGTTTTCAGGGCACAGCTTTTTGGC 1037
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CCTGCTCACAAATTGGTTCTTGCAGCACGTTCTGCAGTTTTGAGGGCACAGCTTTTTGGC 719
Query 1038 CCGTTGAGAAGTGAAAATACCAATTGTATAATCATAGAAGACGTACAAGCCCCTATTTTC 1097
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 720 CCGTTGAGAAGTGAAAATACCAAATGTATAATCATAGAAGACATACAAGCCCCTATTTTC 779
Query 1098 AAGATGTTGCTTCATTTTATCTACTGGGATGAAATGCCTGATATGCAAGACTTAATCGGC 1157
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 780 AAGATGTTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGACTTAATGGGC 839
Query 1158 ACAGACTTGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGT 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACAGACTTGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGA 899
Query 1218 TATGCTCTTGAGCGGCTTAGAACAATATGCGAGTCAAAACTCTGTGAAGGAATCAGCATA 1277
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 TATGCTCTTGAGCGGCTTAGAACAATATGTGAGTCAAAACTCTGTGAAGGAATCAGCATA 959
Query 1278 AATACGGTAGCAACCACCTTGGCTCTTGCAGAGCAGCATCATTGTTTCCAGCTGAAAGCC 1337
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 AATACGGTTGCAACCACCTTGGCTCTTGCTGAGCAGCATCATTGTTTCCAGCTGAAAGCC 1019
Query 1338 GCCTGCCTCAAATTTATAGCTTTGCCAGAAAACCTGAAAGCTGTGATGGAAACGGATGGG 1397
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1020 GCCTGCCTCAAATTTATAGCTTTTCCAGAAAACCTAAAAGCTGTGATGGAAACGGATGGG 1079
Query 1398 TTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTAAGTGAGCTATTGGAGTATGTGGCT 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACTAAGTGAGCTATTGGAGTATGTGGCT 1139
Query 1458 AGGCTGAGTGAGCACTCTTTAACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGGCTGAGTGAGCACTCTTTAACATCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1199
Query 1518 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACATTA-GCAACTAATTgagagaga 1576
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1200 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACACTAAGCAACTAACTGAGAGAGA 1259
Query 1577 ga 1578
||
Sbjct 1260 GA 1261
> Ahg488784 jgi|Araly1|488784|fgenesh2_kg.6__1918__AT5G19000.1
Length=1424
Score = 998 bits (540), Expect = 0.0
Identities = 1032/1263 (82%), Gaps = 60/1263 (5%)
Strand=Plus/Plus
Query 321 GGAT-CTCGTCTTTGTTTGATGGACACAATTAGGGTTTCCAAGGAGG-TTC--CTGGATC 376
|||| || ||| ||| ||||||| ||||| |||||||| | ||||| ||| |||||||
Sbjct 80 GGATCCTTGTC-TTG-TTGATGGGCACAACTAGGGTTTGCTCGGAGGTTTCTTCTGGATC 137
Query 377 TTCGAAATCGAC--CGCACAGTCGCTCACGG-AGTCGACCTCT-CGCACGGAAACCATCA 432
|||||||||| | || || || ||||||| | ||||| ||| | ||| |||||| |||
Sbjct 138 TTCGAAATCG-CTTAGC-CAATCTCTCACGGTA-TCGACGTCTAC-CACAGAAACCGTCA 193
Query 433 ATGGCTCCCACGAATTCAAGATCAGCGGCTACTCT-TTGGTCAAAGG-CATGGGGATTGG 490
|||| | ||| |||||||||||| |||| |||||| | | | ||||| ||| | ||||
Sbjct 194 ATGGTTTCCATGAATTCAAGATCTGCGGATACTCTCTCGCT-AAAGGTGTTGGTG-TTGG 251
Query 491 CAAATACGTTGCCTCGGATAC-TTTCATGGTCGGTGGATACTCCTGGGCCATCTACTTCT 549
||||||||| || || ||||| ||| ||||||||||| ||||| ||||| |||||||| |
Sbjct 252 CAAATACGTCGCTTCCGATACGTTT-ATGGTCGGTGGTTACTCGTGGGCAATCTACTTTT 310
Query 550 ACCCAGATGGAAAGAGTCCAGAGGATAATTCTGTC-TACGTGTCTCTCTTCATAGCCCTT 608
|||||||||| |||||||| |||||||| || ||| ||||| ||| | |||||||| |||
Sbjct 311 ACCCAGATGGGAAGAGTCCGGAGGATAACTC-GTCTTACGTTTCTTTGTTCATAGCTCTT 369
Query 609 GCGAGTGAAGGAGCCGATGTTAGGGCTTTGTTTGAGCTTACCCTCGTGGATCAGAGCGGT 668
|| || |||||||| ||||| ||||||||||| ||||| || || ||||||||||| |||
Sbjct 370 GCTAGCGAAGGAGCTGATGTGAGGGCTTTGTTCGAGCTCACGCTTGTGGATCAGAGTGGT 429
Query 669 AA-CGAAAGGCACAAAGTTCATAGCCATTTTGGTAGAACTCTCGAAAGCGGACCCTATAC 727
|| | || ||| || ||||||||||||||||| ||| | ||||| |||||||| |||||
Sbjct 430 AATGGGAA-GCATAAGGTTCATAGCCATTTTGGCAGAGCACTCGAGAGCGGACCATATAC 488
Query 728 TCTTAAATATCGAGGGAGTATGTGGGGATACAAACGATTTTTCAAG-AGGTCTC-TTTTG 785
||| || ||||| || || |||||||||||||| || |||||| || ||||| | | |
Sbjct 489 TCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTC-AGAAGGTC-CAGTCTA 546
Query 786 GAGTCATCGGACTATCTGAAGGACAATGGTCTCTTGGTCCGGTGTTGTGTTGGAGTGGTG 845
|| || ||||| ||| ||||||| ||| |||||||||| |||| |||| || ||||||
Sbjct 547 GAATCGTCGGATTATTTGAAGGAAAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGGTG 606
Query 846 AAGTCACG-CACAGAAGGACCGAGGTGTTACAATATCCCGGTGCCGGTTTCTGGCTTGGG 904
|||||| | || || ||||| |||| |||||||||||| || || || ||| ||||||
Sbjct 607 AAGTCA-GTTACGGAGGGACCAAGGTATTACAATATCCCTGTCCCAGTCTCTAACTTGGG 665
Query 905 TCAGCAGTTTGGAAAGCTTTTGGAAAGTGGGAAAGG-AGCTGACGTTACTTTCGAAGTTG 963
|| ||||| ||||| |||||||||||||||||||| | ||| |||| |||| || |||
Sbjct 666 ACAACAGTTGGGAAATCTTTTGGAAAGTGGGAAAGGCTG-TGATGTTATTTTCCAACTTG 724
Query 964 ATGGAGAAACATTTC--CTGCTCACAAATTGGTTCTTGCAG-CACGTTCTGCAGTTTTCA 1020
|||||||||| ||| | || ||||||||||||||||| | | ||||| | |||||||
Sbjct 725 ATGGAGAAAC-CTTCAAC-GCACACAAATTGGTTCTTGC-GACGCGTTCCCCGGTTTTCA 781
Query 1021 GGGCACAGCTTTTTGGCCCGTTGA-GA-AGTGAAAATACCAATTGTATAATC-ATAGAAG 1077
|||||||||||||||||| || | || | | |||||| || || |||| | |||||||
Sbjct 782 AGGCACAGCTTTTTGGCCC-TTTAGGAGACCG-AAATACGAAATGCATAA-CGATAGAAG 838
Query 1078 ACGTACAAGC-CCCTATTTTCAAGATGTTGCTTCATTTTATCTACTGGGATGAAATGCCT 1136
|| | |||| ||| ||||||||| | ||||| ||||||||||||||||| ||| |||||
Sbjct 839 ACATGGAAGCACCC-ATTTTCAAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCT 897
Query 1137 GATATGCAAGACTTAATCGGCACAGACT-TGAAATGGGCATCAACTCTTGTGGCTCAGCA 1195
||||||||||| ||||| ||||| |||| | | || ||| || |||||||||||||||||
Sbjct 898 GATATGCAAGAGTTAATGGGCACGGACTCT-ACATTGGCGTCTACTCTTGTGGCTCAGCA 956
Query 1196 TCTGCTTGCAGCTGCAGACCGTTATGCTCTTGAGCGGCTTAGAA-CAATATGCGAGTCAA 1254
|||||||||||| |||||||||||||||||||||||||||| || | || || |||||||
Sbjct 957 TCTGCTTGCAGCGGCAGACCGTTATGCTCTTGAGCGGCTTA-AAGCTATCTGTGAGTCAA 1015
Query 1255 AACTCTGTGAAGGAATCAGC-ATAAATACGGTAGCAACCACCTTGGCTCTTGCAGAGCAG 1313
||||||||||||| || || ||||| ||||| ||||| |||||||| || |||||||||
Sbjct 1016 AACTCTGTGAAGGGGTC-GCCATAAACACGGTTGCAACTACCTTGGCACTAGCAGAGCAG 1074
Query 1314 CATCATTGTTTCCAGCTGAAAGCCGCCTGCCTCAAATTTATAGCTTTGCCAGAA-AACCT 1372
||||||||||||||||| ||||| | || ||||||||| | || ||||| || |||||
Sbjct 1075 CATCATTGTTTCCAGCTAAAAGCAGTTTGTCTCAAATTTGTGGCACTGCCA-AAGAACCT 1133
Query 1373 GAAAGCTGTGATGGAAACGGATGGGTTTGATTATCTGAAGGAAAGCTGCCCGTCCCTACT 1432
||||| ||||||| | || |||||||||||||||||||| || || ||||| || ||||
Sbjct 1134 GAAAGATGTGATGCACACAGATGGGTTTGATTATCTGAAAGAGAGTTGCCCATCTTTACT 1193
Query 1433 AA-GTGAGCTATTGGAGTATGTGGCTAGGCTGAGTGAGCACTCT-TTAACATCATCAGGG 1490
|| | |||||||||||||||||||| ||||||||||| |||||| ||| | |||| ||
Sbjct 1194 AACG-GAGCTATTGGAGTATGTGGCGAGGCTGAGTGAACACTCTGTTAT-AGCATCTGGA 1251
Query 1491 CATCGAAAGGAGTTATTTGCTGATGGTTGTGACTTAAA-TGGGAGACGTGTGAAGCAACG 1549
|||||||| || ||||||| ||||||||||| | | ||| ||||| ||||||| ||
Sbjct 1252 CATCGAAAAGAAATATTTGCCGATGGTTGTGA-TGCGAGTGGTAGACGAGTGAAGCCCCG 1310
Query 1550 GTT 1552
|||
Sbjct 1311 GTT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5