BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06200.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340799 jgi|Araly1|340799|fgenesh1_pg.C_scaffold_3000562 1083 0.0
Ahg897697 jgi|Araly1|897697|Al_scaffold_0005_1663 78.7 1e-13
> Ahg340799 jgi|Araly1|340799|fgenesh1_pg.C_scaffold_3000562
Length=921
Score = 1083 bits (586), Expect = 0.0
Identities = 662/699 (95%), Gaps = 4/699 (1%)
Strand=Plus/Plus
Query 211 ATGACCGATACCCATATCCCAGGA-AACCCTAATTCGTCC-CCTATCCAATCTCCCACCA 268
|||||||||||||| ||||| || ||| ||| ||||||| | || |||||||||||||
Sbjct 1 ATGACCGATACCCAGATCCC-TGATAACTCTAGTTCGTCCTCAAAT-CAATCTCCCACCA 58
Query 269 AACCCGAGTCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 328
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AACCCGAATCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 118
Query 329 TCATCCCGCCGCCGAATCAGATCGTCATCGTTATTAGCGGTCCAAGCGGAGTTGGTAAAG 388
| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 119 TTATCCCACCGCCGAATCAGATCGTCATCGTTATCAGTGGTCCGAGCGGAGTTGGCAAAG 178
Query 389 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTTCATTTTGTTGTTACCGCCA 448
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 179 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTACATTTCGTTGTTACCGCCA 238
Query 449 CTAGTCGTCCGATGCGACCTGGTGAAGTTGATGGTAAAGACTATTTCTTTGTCTCGAGAG 508
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 239 CTAGCCGTCCGATGCGACCCGGTGAAGTCGATGGTAAAGACTATTTCTTTGTGTCGAGAG 298
Query 509 ATCAGTTCTTGTCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 568
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATCAATTTTTATCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 358
Query 569 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAATTTATGGCCAAAGGGGAAGACATTG 628
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 359 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAGTTTATGGCTAAAGGGGAAGACATTG 418
Query 629 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCTGCTG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 419 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCCGCCG 478
Query 689 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCTATGGTGGAGAGGTTGATTGATCGGA 748
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCGATGGTGGAGAGGTTGATTGATCGGA 538
Query 749 AGACGGAGAGTCAAGAGGAGTTGCTTGTTAGAGTTGCTACGGCGAGAGAAGAGGTTAGGC 808
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 539 AGACGGAGAGTCAAGAGGAGCTGCTTGTTAGAGTTGCTACGGCGAGGGAAGAGGTTAGGC 598
Query 809 ATCTAAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 868
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCTTAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 658
Query 869 ACCGCGTGGAATCGATTATCGATGCTGAGAAATCTAAAG 907
| ||||||||||| |||||||||||||||||||| ||||
Sbjct 659 ATCGCGTGGAATCCATTATCGATGCTGAGAAATCGAAAG 697
> Ahg897697 jgi|Araly1|897697|Al_scaffold_0005_1663
Length=291
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 796 GAAGAGGTTAGGCATCTAAAGAACTTTGATTACGTTGTGGTGAAT 840
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 199 GAAGAGGTTAGACATCTAAAGAACTTTGATTACGTTGTGGTGAAT 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5