BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06200.1 Length=1335 Score E Sequences producing significant alignments: (Bits) Value Ahg340799 jgi|Araly1|340799|fgenesh1_pg.C_scaffold_3000562 1083 0.0 Ahg897697 jgi|Araly1|897697|Al_scaffold_0005_1663 78.7 1e-13 > Ahg340799 jgi|Araly1|340799|fgenesh1_pg.C_scaffold_3000562 Length=921 Score = 1083 bits (586), Expect = 0.0 Identities = 662/699 (95%), Gaps = 4/699 (1%) Strand=Plus/Plus Query 211 ATGACCGATACCCATATCCCAGGA-AACCCTAATTCGTCC-CCTATCCAATCTCCCACCA 268 |||||||||||||| ||||| || ||| ||| ||||||| | || ||||||||||||| Sbjct 1 ATGACCGATACCCAGATCCC-TGATAACTCTAGTTCGTCCTCAAAT-CAATCTCCCACCA 58 Query 269 AACCCGAGTCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 328 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 AACCCGAATCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 118 Query 329 TCATCCCGCCGCCGAATCAGATCGTCATCGTTATTAGCGGTCCAAGCGGAGTTGGTAAAG 388 | ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||| Sbjct 119 TTATCCCACCGCCGAATCAGATCGTCATCGTTATCAGTGGTCCGAGCGGAGTTGGCAAAG 178 Query 389 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTTCATTTTGTTGTTACCGCCA 448 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 179 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTACATTTCGTTGTTACCGCCA 238 Query 449 CTAGTCGTCCGATGCGACCTGGTGAAGTTGATGGTAAAGACTATTTCTTTGTCTCGAGAG 508 |||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 239 CTAGCCGTCCGATGCGACCCGGTGAAGTCGATGGTAAAGACTATTTCTTTGTGTCGAGAG 298 Query 509 ATCAGTTCTTGTCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 568 |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 ATCAATTTTTATCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 358 Query 569 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAATTTATGGCCAAAGGGGAAGACATTG 628 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 359 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAGTTTATGGCTAAAGGGGAAGACATTG 418 Query 629 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCTGCTG 688 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 419 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCCGCCG 478 Query 689 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCTATGGTGGAGAGGTTGATTGATCGGA 748 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 479 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCGATGGTGGAGAGGTTGATTGATCGGA 538 Query 749 AGACGGAGAGTCAAGAGGAGTTGCTTGTTAGAGTTGCTACGGCGAGAGAAGAGGTTAGGC 808 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 539 AGACGGAGAGTCAAGAGGAGCTGCTTGTTAGAGTTGCTACGGCGAGGGAAGAGGTTAGGC 598 Query 809 ATCTAAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 868 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ATCTTAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 658 Query 869 ACCGCGTGGAATCGATTATCGATGCTGAGAAATCTAAAG 907 | ||||||||||| |||||||||||||||||||| |||| Sbjct 659 ATCGCGTGGAATCCATTATCGATGCTGAGAAATCGAAAG 697 > Ahg897697 jgi|Araly1|897697|Al_scaffold_0005_1663 Length=291 Score = 78.7 bits (42), Expect = 1e-13 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 796 GAAGAGGTTAGGCATCTAAAGAACTTTGATTACGTTGTGGTGAAT 840 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 199 GAAGAGGTTAGACATCTAAAGAACTTTGATTACGTTGTGGTGAAT 243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49941021270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5