BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06210.1
Length=2697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477922 jgi|Araly1|477922|fgenesh2_kg.3__623__AT3G06210.1 3048 0.0
Ahg488782 jgi|Araly1|488782|fgenesh2_kg.6__1916__AT5G18980.1 1967 0.0
> Ahg477922 jgi|Araly1|477922|fgenesh2_kg.3__623__AT3G06210.1
Length=2668
Score = 3048 bits (1650), Expect = 0.0
Identities = 1813/1892 (96%), Gaps = 9/1892 (0%)
Strand=Plus/Plus
Query 1 ATGTATTCCGAGAATATTGGAGAAGATGATCGGAGCATCCATTTGCAGGTGTTGGAGCTC 60
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATTCCGAGAATTTTGGAGAGGATGATCGGAGCATCCATTTGCAGGTGTTGGAGCTC 60
Query 61 CAAAAATTGGAAGAAGCACGAGGCTCAAGCGACACCGTTTTGGATTATAGAAACAGCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAAATTGGAAGAAGCACGAGGCTCAAGCGACACCGTTTTGGATTATAGAAACAGCGTC 120
Query 121 GAGAAAGGAGACAGCGGCGAAACCGCAGACGCAGCGTCTGTA-TCTTCCGCGATCGCGTT 179
| |||||||||||||||||||||||||||||| |||| | || ||||||||||||||
Sbjct 121 --G-AAGGAGACAGCGGCGAAACCGCAGACGCAGTGTCT-AATTCCTCCGCGATCGCGTT 176
Query 180 TCACAGATCAACATCACCCGCGCCGGAGCAGAAACTCACACTCTTCGCTCTCCGCCTTGC 239
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 177 TCACAGACCAACATCACCCGCGCCGGAGCAGAAGCTCACACTCTTCGCTCTCCGCCTCGC 236
Query 240 AATCATCGAGAAAATCGCCACTAATCTCGGAACCCTAGGTTTCATTTGGGCCACGGTGGT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AATCATAGAGAAAATCGCCACTAATCTCGGAACCCTAGGTTTCATTTGGGCCACGGTGGT 296
Query 300 TCTTCTCGGTGGATTCGCTATCACGCTCGAAAAATCCGATTTTTGGTTCATCACCATCAT 359
||||||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 297 TCTTCTCGGCGGATTCGCGATCACACTCGAAAAATCCGACTTCTGGTTCATCACCATCAT 356
Query 360 TCTCCTCATCGAAGGCACTCGAATCTTCAGCAGAAGCCACGAGCTCGAGTGGCAGCACCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTCCTCATCGAAGGCACTCGAATCTTCAGCAGAAGCCACGAGCTCGAGTGGCAGCACCA 416
Query 420 GGCCACGTGGACTGTATCCGGCGTCGGAATCAGTAGCTTCCGCGTGCTCCAATCAAGCTC 479
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 417 TGCCACGTGGACTGTATCCGGCGTCGGAATTAGTAGCTTCCGCGTGATCCAATCAAGCTC 476
Query 480 AATTTCACTTCTCAGAAAT-TTAAAACGAATCAGCGATGGGATCTTTAAGCCGATCCTCG 538
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 477 AATTTCACTTCTCAGAAATCTT-AAACGAATCAGCGAAGGGATCTTTAAGCCGATCCTCG 535
Query 539 ACAATGGATTGAGAGAAGCGACGACGAGAATCGGACGACAAGAGATCTTTGATCGTCGAA 598
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 ATAATGGATTGAGAGAAGCGACGACGAGAATCGGACGACAAGAGACCTTTGATCGTCGAA 595
Query 599 CAACTCTGACATGGAAGAACTCAGAAGTTCCTCTTCTTCCATATGCGAGATGGCTTTACA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAACTCTGACATGGAAGAACTCAGAAGTTCCTCTTCTTCCATATGCGAGATGGCTTTACA 655
Query 659 TCTCCAGCTATGTGAGTCGGATTCTCTACTGGCTCCAGCTTTTGTCAGCGAGTGCTTGTG 718
|||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 656 TCTCCAGCTACGTGAGCCGGCTTCTTTACTGGCTCCAGCTTTTGTCAGCGAGTGCTTGTG 715
Query 719 TGGCTCTGTCTTCCTACAAGCTCGTAATGCACAACTACGGAGATGTTCAAGACGGAGACT 778
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 716 TGGCTCTGTCTTCTTACAAGCTCGTAATGCACAACTACGGAGATGTTCAAGATGGAGACT 775
Query 779 TGGACAAAAGGAATAGACAAGCCGCTCTCAGCATCTTCTACTCGCTTGCTCTTGCCGAAG 838
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 776 TGGACAAAAGGAACAGACAAGCCGCTCTCAGCATCTTCTACTCGCTTGCGCTTGCCGAGG 835
Query 839 CGTTGTTGTTTCTTGCGGAGAAAGCTTACTGGGAGTGGGAGGTCAGTGTGTGTCACTTGC 898
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 836 CGTTGTTGTTTCTTGCGGAGAAAGCTTACTGGGAGTGGGAGGTCAGTGTCTGTAACTTGC 895
Query 899 TTGAGAATGTGACTAGAGAGTGTGGGTTTGGGGTTACTGGAATGGTCTCTATCAAGAGAT 958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 TTGAGAATGTGACTAGAGAGTGTGGGTTTGGGGTTAGTGGAATGGTCTCTATCAAGAGAT 955
Query 959 TCTTCTATGATGCTTACTCCAAGTCTGTCAATGGGAGTATCTTTGATGGTGTGAAGATGG 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCTTCTATGATGCTTACTCGAAGTCTGTCAATGGGAGTATCTTTGATGGTGTGAAGATGG 1015
Query 1019 ATATGGTTAGCTTTGCTATGGATCTCTTGGGCTCGAACTGCTCTGATGAACAGCTCATCG 1078
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1016 ATATGGTGAGCTTTGCTATGGATCTCTTGGGCTCAAACTGCTCCGATGAACAGCTCATCG 1075
Query 1079 GAGCGAGGATTCTTAGGCAGTTTGCTGTAAATGAGCGGTTCGCAGAGGATACACTTGAGA 1138
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGCGAGGATTCTCAGGCAGTTTGCTGTAAATGAGCGGTTCGCAGAGGATACACTTGAGA 1135
Query 1139 AGATCGGTATCAACTTACCTGTCATTGAAAGGTTGGTGGAGATGTTGAACTGGAAAGATC 1198
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 AGATCGGAATCAACTTACCTGTCATTGAAAGGTTGGTGGAAATGTTGAACTGGAAAGATC 1195
Query 1199 TGCAAGAAGAAGAGATTAGGAGATCAGCGGCTGAGATACTCTCAAAACTCGCTGGCAAAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGCAAGAAGAAGAGATTAGGAGATCAGCGGCTGAGATACTCTCAAAACTCGCTGGCAAAA 1255
Query 1259 AGCAGAACTCTCTCAGAGTTGCTGGAATCTCTGGTGCGATGGAATCAATTTCATCACTGT 1318
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1256 AGCAGAACTCTCTCAGAGTTGCCGGAATCTCTGGTGCGATGGAATCGATTTCATCACTGT 1315
Query 1319 TACAGAACACAAGATCTTTAGGTGAAGCTCCTGACGAGATTGGAGAGAAGAAACTCTTCC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1316 TACAGAACACAAGATCTTTAGGTGAAGCTCCTGACGAGATTGGAGAGAAGAAAATCTTCC 1375
Query 1379 ACGACCATCATCTACACTACGATTTCTGGAGGTTCAACAATTTAGGCCTCTTGATTCTAA 1438
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 ACGACCATCATCTTCACTACGATTTCTGGAGGTTCAACAATTTGGGCCTCTTGATTCTAA 1435
Query 1439 AGAAATTATCCAGAGATCATGACAACTGTGGGAAAATTGGTAACACGAGAGGGCTTCTCC 1498
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 AGAAATTATCCAGAGATCATGACAACTGTGGGAAAATCGGTAACACGAGAGGGCTTCTCC 1495
Query 1499 CTAAGATCATTGACTTCACGCACACAGACGCAACACTCTTGAAGGATGAGAACGCAGATA 1558
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CTAAGATCATTGACTTTACACACACAGACGCAACACTCTTGAAGGATGAGAACGCAGATA 1555
Query 1559 TGGTTCTGTCACGAGTCCTTACAGTGAAACGGTCGCTGCAGCTAGTGAAAATGTTAGTAA 1618
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TGGTTCTGTCACAAGTCCTGACAGTGAAACGGTCGCTGCAGCTAGTGAAAATGTTAGTAA 1615
Query 1619 GCACAAGTGGCAACACCGGGAAATGTCTCAGGAGGGAGATCTCAGAAATCGTCTTCACAA 1678
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1616 GCACAAGCGGCAACACCGGGAAATGTCTCAGGAGGGAGATCTCAGAAATTGTATTCACAA 1675
Query 1679 TCAGCAACTTGAGAGACGTATTGCGGCATGGAGTGAGATACCCGAAATTGCAGAAGCTCG 1738
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1676 TCAGTAACTTGAGAGACGTATTGCGTCATGGAGTGAGATACCCAAAATTGCAGAAACTCG 1735
Query 1739 GGATTGAGATTCTTAGCTTCCTCGCGCTTGAGACTGATGGGCGGGAGAGAATTGCCGTTA 1798
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1736 GGATCGAGATTCTGAGCTTCCTCGCGCTTGAGACTGATGCGCGGGAGAGAATTGGCGTTA 1795
Query 1799 C-TGGAGGTGTCTTGAAAGAGCTGTTCAGCATTTTCCTAAAAAGTAAAAT-ACATGGGGA 1856
| |||||||||||||||||||||||||| ||| ||| | ||||| |||| |||||||||
Sbjct 1796 CCTGGAGGTGTCTTGAAAGAGCTGTTCACCATCTTCTTGAAAAGAAAAACCACATGGGGA 1855
Query 1857 TGAGAATGAAAAGCGGGTCAGGATGGCTGCAG 1888
||||| |||||| |||||||| || |||||||
Sbjct 1856 TGAGAGTGAAAACCGGGTCAGAATCGCTGCAG 1887
Score = 1184 bits (641), Expect = 0.0
Identities = 738/785 (94%), Gaps = 5/785 (1%)
Strand=Plus/Plus
Query 1916 AGAGCAGAAGCAACTGCATCCAAATTCTAAAGCTCGGAGTCTTTGGAAGACTTGTGGAGG 1975
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1886 AGAGCAGAAGCAACTGCATCCAAATTCTGAAGCTCGGAGTCTTTGGAAGACTCGTGGATG 1945
Query 1976 CACTTGAAGTTCCTTTGATCCGTGTCAATGCAGCGAGAGTGTTGAGAAACTTGTGCATAT 2035
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 CACTTGAAGTTCATTTGATCCGTGTCAATGCAGCGAGAGTGTTGAGAAACTTGTGCATAT 2005
Query 2036 ATTCTGGACATGAATGCTTTCTCGACCTGAGGTTCATTAAAACAGCAGCGCCTACTGTAC 2095
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 2006 ATTCTGGACATGAATGCTTTCTCGACCTGAGATTTATTAAAACAGCAGCGCCTACGGTGT 2065
Query 2096 TGAAGTCAATAACATCAGGTGACAATAAATTGCTGGAAGTGATGCTAGGATTGGCAGCAC 2155
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 2066 TGAAGTCAATAACATCAGGTGACAACAAATTACTGGAAGTGATGCTAGGATTAGCAGCAC 2125
Query 2156 AAGTGTTCAAATTCATGAGTTCAGAAGAAGCAAACATTGTTCTGACGGATTCAGGGATCA 2215
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2126 AAGTGTTCAAATTCATGAGTTCAGAAGAAGCAAATATTGTTCTGACGGATTCAGGGATCA 2185
Query 2216 AAAAGCAAGAACTTGCAAACTCACTGGTTTCGATTCTGAAAAAGCATGACAAGCCAGCAA 2275
|||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2186 AAAAGCTAGAACTTGCGAACACACTGGTATCGATTCTGAAAAAGCATGACAAGCCAGCAG 2245
Query 2276 TCAAGGTTCCAAGAATCAGGAGGTTTGTGATCGAGCTTGCGATATGGATGATGGAAGATG 2335
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2246 TCAAGGTTCCAAGAATCAGGAGGTTTGTGATAGAGCTTGCGATATGGATGATGGAAGATG 2305
Query 2336 ATGTGGAGAACGTTGGGATGTTCAGGGATTTGGGTATGGAGAAAGAGCTCGTGAAGGTTC 2395
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2306 ATGTGGAGAACGTTCGGATGTTCAGAGATTTGGGTATGGAGAAAGAGCTCGTGAAGGTTC 2365
Query 2396 TGGAAACTACGGCTGAGCTTGAGAACTTTGATGTTTTCTCTGGCACGGTTGGAGTGAGCC 2455
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2366 TGGAAACTACGGCTGAGCTTGAGAACTTCGATGTTTTCTCTGGCATGGTTGGAGTGAGCC 2425
Query 2456 GACAGAGCAGAACGGTTCATTGGTTAGCTGAATTGGCTTTAAAAATGCTTGAGGATGAAC 2515
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2426 GACAGAGCAGAACGGTTCATTGGTTAGCTGAACTGGCTTTAAAAATGCTTGAGGATGAAC 2485
Query 2516 ATTCTTAAGGTT-CATGTTCCTCTTGAGAAACTCAGAGCG-TGCTAATT-ATGATTTATG 2572
| || |||| || ||| |||||||||||||||| ||||| | || || | | |||||
Sbjct 2486 AATCATAAGTTTTCATCTTCCTCTTGAGAAACTTAGAGCTCT-CTGCTTCAA-AGTTATG 2543
Query 2573 AAACATATCGTTTATTTTTACAATTATTTAAAAAGCTGCTCAAAGTTCAAATTAGAGATA 2632
||| |||||||||| ||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 2544 AAATATATCGTTTAATTTTACAATCATTTAAAAAGTTTCTCAAAGTTCAAATTAGAGATA 2603
Query 2633 TATCTCAAATTCCATCAGTATATACACATACCTTGTAAAGAAAGATACACTTCTCTCGTA 2692
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2604 GATCTCAAATTCCATCCGTATATACATATACCTTGTAAAGAAAGATACACTTCTCTCGTA 2663
Query 2693 ATAGT 2697
|||||
Sbjct 2664 ATAGT 2668
> Ahg488782 jgi|Araly1|488782|fgenesh2_kg.6__1916__AT5G18980.1
Length=2753
Score = 1967 bits (1065), Expect = 0.0
Identities = 2047/2511 (82%), Gaps = 108/2511 (4%)
Strand=Plus/Plus
Query 21 AGAAGATGATCGGAGCATCCATTTGCAGGTGT-TGGAGCTCCAAAAATTGGAAGAAGC-A 78
||| || ||||| ||||| | ||||||||| | | ||||| ||||||||||| ||||| |
Sbjct 159 AGACGAAGATCGAAGCATTCGTTTGCAGGTCTCT-GAGCTTCAAAAATTGGAGGAAGCTA 217
Query 79 CGAGGCTCAAGCGACACCGTTTTGGAT-TATAGAAACAGCGTCGAGAAAGGAGACAGCGG 137
|||| |||| |||||||||||| ||| || |||| |||| | ||||||| ||||||||
Sbjct 218 -GAGGTTCAAACGACACCGTTTTCGATCTA-AGAAGCAGCATTGAGAAAGTCGACAGCGG 275
Query 138 CGAAACCGCAGACGCAGCGTCTGTATCTTCCGCGATCGCGTTTC--A-CAGATCAACA-T 193
|||||||||||||||||| ||||| || ||||||| |||||||| | | ||||||| |
Sbjct 276 CGAAACCGCAGACGCAGCTTCTGTTTCCTCCGCGACCGCGTTTCGTAGAAAATCAACAGT 335
Query 194 CACCCGCGCCGGAGCAGAAACTCACACTCTTCGCTCTCCGCCTTGC-AATCATCGAGAAA 252
| || || |||||| |||| || || || |||||||||| || || | || | ||||||
Sbjct 336 C-CCAGCTCCGGAGAAGAAGCTAACGCTATTCGCTCTCCAACTCGCGATTC-TTGAGAAA 393
Query 253 ATCGCCA-C-TAATCTCGGAACCCTA-GGTTTCATTTGGGCCACGGTGGTTCTTCTCGGT 309
| ||||| | || ||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 394 ACCGCCACCGGAA--TCGGAACCCTAGGGTTT-ATCTGGGCCACAGTGGTTCTTCTCGGC 450
Query 310 GGATTCGCTATCACGCTCGAAAAATCCGATTTTTGGTTCATCACCATCATTCTCCTCATC 369
|| ||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 451 GGCTTCGCGATCACACTCGACGGTTCCGATTTCTGGTTTATCACCATCATTCTCCTAATC 510
Query 370 GAAGGCACTCGAATCTTCAGCAGAAGCCACGAGCTCGAGTGGCAGCACCAGGCCACGTGG 429
||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 511 GAAGGTGCTCGAATCTTCAGCAGAAGTCACGAGCTCGAGTGGCAACACCAAGCCACGTGG 570
Query 430 ACTGTATCCGGCGTCGGAATCAGTAGCTTCCGCG-TGCTCCAATCAAGCTCAATTTCACT 488
|| || |||||||||||||||||||||| |||| | |||| |||||| ||| || ||
Sbjct 571 ACCGTCGCCGGCGTCGGAATCAGTAGCTTTCGCGCT-CTCCGATCAAGTTCAGCCTCGCT 629
Query 489 TCTC-AGAAATTTAAAACGAATCAGCGATGGGATCTTTAAGCCGATCCTCGACAATGGAT 547
|||| || ||| ||||||||||||| | | ||||| ||||| | || || ||
Sbjct 630 TCTCAAG-AATCTAAAACGAATCAGTGCTTCAATCTTCAAGCC-A----CG---ATCGA- 679
Query 548 TGAGAGAAGCGAC-G-ACGAGAATCG-GACG-ACAAGAGATCTTTGATCGTCGAACAACT 603
| | |||||||| | | |||| | | | || | ||||| | || ||| | |
Sbjct 680 -G-G-GAAGCGACGGCAAGAGACT-GTGTCGTTCCAGAGA-C---GA-CGT--TA-GA-- 725
Query 604 CTGACATGGAAGAACTCAGAAGTTCCTCTTCTTCCATATGCGAGATGGCTT-TACATCTC 662
|||||||||||||||||| || ||||| |||||||| ||||||||| || | |||||
Sbjct 726 --GACATGGAAGAACTCAGACGTACCTCTGCTTCCATACGCGAGATGG-TTCTTTATCTC 782
Query 663 CAGCTA-TGTGAGTCGGATTCTCTACTGGCTCCAGCTTTTGTCAGCGA-GTGCTTGTGTG 720
||| || |||||||| |||| ||||||||||| ||| | || || | | ||||||||
Sbjct 783 CAG-TACAGTGAGTCGTCTTCTTTACTGGCTCCAACTTCTATCTGCAACG-GCTTGTGTT 840
Query 721 GCTCTGTCTTCCTACAAGCTCGTAATGCACAACTACGGAGATGTTCA-AGACGGAGACT- 778
||||||||||| |||||||| || | ||| ||||| ||||||||||| | | ||||| |
Sbjct 841 GCTCTGTCTTCTTACAAGCTTGTCAGGCATAACTATGGAGATGTTCATA-AAGGAGA-TA 898
Query 779 TGGACAAAAGGAATAGACAAG-CCGCTCTCAGCATCTTCTACTCGCTTG-CTCTTGCCGA 836
||| || |||||||||| || | ||||||| ||| ||||||||||| | || |||| ||
Sbjct 899 CGGATAAGAGGAATAGAC-AGTCGGCTCTCAACATATTCTACTCGCTCGCCT-TTGCGGA 956
Query 837 AGCGTTGTTGTTTCTTGCGGAGAAAGCTTACTGGGAGTGGGAGGTCAGTGTGTGTCACTT 896
|||||||||||||||| |||||||| ||||||||||||| | |||||||| ||| | ||
Sbjct 957 GGCGTTGTTGTTTCTTGTGGAGAAAGTTTACTGGGAGTGGCAAGTCAGTGTTTGTAATTT 1016
Query 897 GCTTGAGAATGTGACTAGAGAGTGTGGGTTTGGGGTTACTGGAATGGTCTCTATCAAGAG 956
|||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||||
Sbjct 1017 GCTTGAGAATGTGACTAGAGAGTGTGAGTTTGGGGTTACTGGTTTGGTTTCGATCAAGAG 1076
Query 957 ATTCTTCTATGATGCTTACTCCAAGTCTGTCAATGGGAGTATCTTTGATGGTGTGAAGAT 1016
|| ||||||||| | || ||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 1077 GTTTTTCTATGATTCGTATTCCAAGTGTGTCAATGGGAGTATATTTGATGGTTTGAAGAT 1136
Query 1017 GGATATGGTTAGCTTTGCTATGGATCTCTTGGGCTCGAACTGC-TCTGATGAACAGCTCA 1075
|||||| || ||||||| |||||| ||||||| |||||||| | |||||||||||||| |
Sbjct 1137 GGATATAGTGAGCTTTGGTATGGAGCTCTTGGACTCGAACT-CTTCTGATGAACAGCTTA 1195
Query 1076 TCGGAGCGAGGATTCTTAGGCAGTTTGCTGTAAATGAGCGGTTCGCAGAGGATACACTTG 1135
| |||| ||||||||||||||||||||| || | ||| || | | | |||||||||||||
Sbjct 1196 TTGGAGTGAGGATTCTTAGGCAGTTTGCAGTGACTGAACGCTACTCGGAGGATACACTTG 1255
Query 1136 AGAAGATCGGTATCAACTTACCTGTCATTGAAAGGTTGGTGGAGATGTTGAACTGGAAAG 1195
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 AGAAGATCGGAATTAACTTTCCTGTTATTGAAAGGTTGGTGGAGATGTTGAACTGGAAAG 1315
Query 1196 ATCTGCAAGAAGAAGAGATTAGGAGATCAGCGGCTGAGATACTCTCAAAACTCGCTGGCA 1255
|||| ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 1316 ATCTCCAAGAGGAAGAGATTAGGAGATCAGCCGCTGAGATACTATCGAAACTTGCTGGCA 1375
Query 1256 AAAAGCAGAACTCTCTCAGAGTTGCTGGAATCTCTGGTGCGATGGAATCAATTTCATCAC 1315
|||||||||||||| | ||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1376 AAAAGCAGAACTCTTTAAGAGTTGCTGGTATTTCTGGTGCAATGGAATCGATTTCATCGT 1435
Query 1316 TGTTACAGAACACAAGATCTTTAGGTGAAGCTCCTGACGAGATTGGAGAGAAGAAAC-TC 1374
||||| ||||||| ||||| | ||||||||||||||| |||||||||||||| ||| |
Sbjct 1436 TGTTAGAGAACACGAGATCATCAGGTGAAGCTCCTGATGAGATTGGAGAGAA-AAAGGTG 1494
Query 1375 TTCCACGACCATCATCTACACTACGATTTCTGGAGGTTCAACAATTTAGGCCT-CTTGAT 1433
||||| |||||| |||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 1495 TTCCATGACCATAATCTACACTACGATTTCTGGAGATTCAACAATTTGGGCCTTCTA-AT 1553
Query 1434 TCTAAAGAAATTATCCAGAGATCATGACAACTGTGGGAAAATT-GGTAACACGAGAGGGC 1492
||| ||||||||| ||| |||||||||||||||||| |||| | || ||||||||||| |
Sbjct 1554 TCTGAAGAAATTAGCCAAAGATCATGACAACTGTGG-AAAACTCGGCAACACGAGAGGTC 1612
Query 1493 TTCTCCCTAAGATCATTGACTTCACGCACACAGACGCAACA-CTCTTGAAGGATGAGAAC 1551
||||||| ||||| ||||| ||||| ||| | || | || | || |||| |||||||||
Sbjct 1613 TTCTCCCGAAGATAATTGATTTCACACACGCGGATGAAA-ATCTGTTGAGGGATGAGAAT 1671
Query 1552 GCAGATATGGTTCTGTCACGAGTCCTTACAGTGAAACGGTCGCTGCAGCTAGTGAAAATG 1611
||||| || | |||| | || || ||| |||||||||| || ||||| |||||||||
Sbjct 1672 GCAGACATCGCGAGGTCATGTGTTCTGACACTGAAACGGTCACTTCAGCTTGTGAAAATG 1731
Query 1612 TTAGTAAGCACAAGTGGCAACACCGGGAAATGTCTCAGGAGGGAGATCTCAGAAATCGTC 1671
|||| ||||||| || ||||| ||||| || ||| |||| |||||||| || || ||
Sbjct 1732 TTAGCCAGCACAACAGGGAACACAGGGAAGTGCCTCCGGAGAGAGATCTCTGAGATTGTA 1791
Query 1672 TTCACAATCAGCAACTTGAGAGACGTATTGCGGCATGGAGTGAGATACCCGAAAT-TGCA 1730
|||||| | |||||| |||| || ||| || | || || | ||||||||| ||| ||||
Sbjct 1792 TTCACAGTTAGCAACGTGAGGGATGTACTGAGACACGGGGCGAGATACCC-AAAGCTGCA 1850
Query 1731 GAAGCTCGGGATTGAGATTCTT-AGCTTCCTCGCGCTTGAGACTGATGGGCGGGAGAGAA 1789
|||||||||||| | ||| || | | ||| || |||||| | || | ||||||||||
Sbjct 1851 GAAGCTCGGGATCGGGATA-TTGACCAACCTTGCACTTGAGGCCGAAGCTCGGGAGAGAA 1909
Query 1790 TTGCCGTTACTGGAGGTGT-CTTGAAAGAGCTGTTCAGCATTTTCCTAAAAAGTAAAATA 1848
||| || || || ||||| || ||||||| |||||| ||||||| | ||| | ||| |
Sbjct 1910 TTGGCGGAACCGGTGGTGTTCT-GAAAGAGTTGTTCAACATTTTCTTTAAACGGGAAACA 1968
Query 1849 CATGGGGATGAGAATGAAA-AGCG--G-GTCAGGATGGCTGCAGGTGAAGCTATAGGGAT 1904
|| ||||| ||| ||| || | | || ||||| |||||||| ||||| |||| |||
Sbjct 1969 CACGGGGACGAGGG-GAATGAGGGATGTGTGAGGATTGCTGCAGGAGAAGCGATAGCGAT 2027
Query 1905 GCTTGCT-TTGGAGAGCA-GAAGCAACTGCATCCAAATTCTAAAGCTCGGAGTCT-TTGG 1961
||||| | |||||||||| || |||||||| |||| |||| | ||| || || | ||||
Sbjct 2028 GCTTG-TGTTGGAGAGCAAGA-GCAACTGCCTCCATGTTCTTAGGCTTGGGGT-TATTGG 2084
Query 1962 AAGACTTGTGGAGGCACTTGAAGTTCCTTTGATCCGTGTCAATGCAGCGAGAGTGTTGAG 2021
|||||||||||| ||||||||||||||| ||||||||| || || || |||||||||||
Sbjct 2085 AAGACTTGTGGAAGCACTTGAAGTTCCTCCGATCCGTGTGAACGCTGCAAGAGTGTTGAG 2144
Query 2022 AAACTTGTGCATATATTCTGGACATGAATGCTTTC-TCGACCTGAGGTTCATTAAAACAG 2080
|||||||||| |||| || || |||||||||||| | ||||||| |||| ||||| |||
Sbjct 2145 AAACTTGTGCTTATACTCCGGGGATGAATGCTTTCAT-GACCTGAAGTTCGTTAAAGCAG 2203
Query 2081 CAGCGCCTACTGTACT-GAAGTCAATAACATCAGGTGACAATAAATTGCTGGAAGTGATG 2139
|||| || || || || |||||||||||| |||| ||||| ||||| | ||||||||||
Sbjct 2204 CAGCACCAACAGT-CTTGAAGTCAATAACTTCAGAAGACAACAAATTACAGGAAGTGATG 2262
Query 2140 CTAGGATTGGCAGCACAAGTGTTCAAATTCATGAGTTCAGAAGAAGCAAAC-AT-TGTTC 2197
| ||||| ||||| |||||||| | ||||||||||||| ||||| | | | || | |||
Sbjct 2263 GTGGGATTAGCAGCCCAAGTGTTTAGATTCATGAGTTCAAAAGAATCGAGCTATGTTTTC 2322
Query 2198 TGACGGATTCAGGGATCAAAA-AGCAAGAACTTGCAAACTCACTGGTTTCGATTCTGAAA 2256
| ||||||||| ||||| | | |||||||| |||||||| |||| || ||||| |||
Sbjct 2323 TT--GGATTCAGGCATCAAGAGA-CAAGAACTGGCAAACTCGTTGGTCTCAATTCTTAAA 2379
Query 2257 AAGCATGACAAGCCAGCAATCAAGGTTCCAAGAATCAGGAGGTTTGTGATCGAGCTTGCG 2316
||| | |||||||| || || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 2380 AAGAACGACAAGCCGGCGATTAAGGTTCCAAGAATCAGGAGGTTTGTGATTGAGCTGGCG 2439
Query 2317 ATATGGATGATGGAAGATGATGTGGAG-A-AC-GTTGGGAT-GTTCAGGGATTTGGGTAT 2372
|| |||||||||||||||||| ||||| | | || | || ||| || || ||||| |
Sbjct 2440 ATTTGGATGATGGAAGATGATTTGGAGGATAATGTAGC-ATTGTTTAGAGAGATGGGTCT 2498
Query 2373 GGAGAAAGAGCTCGTGAAGGTTCTGGAAACTACGGCTGAGCTTGAGAACTTTGATGTTTT 2432
||||||||||| | ||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 2499 AGAGAAAGAGCTTGAGAAGGTTCTAGAAACTACTGCTGAGCTCGAGAACTTTGATGTTTT 2558
Query 2433 CTCTGGCACGGTTGGAGTGAGCCGACAGAGCAGAACGGTTCATTGGTTAGC 2483
||| || || |||||| | ||||| || |||||||| || |||| | ||||
Sbjct 2559 CTCCGGTACTGTTGGACTAAGCCGTCATAGCAGAACTGTGCATTCGCTAGC 2609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101739044395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5