BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06220.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500 763 0.0
Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494 399 1e-110
> Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500
Length=528
Score = 763 bits (413), Expect = 0.0
Identities = 487/522 (93%), Gaps = 7/522 (1%)
Strand=Plus/Plus
Query 143 ATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTTCTTTCCTGTGTCAGTTCC 202
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCTTCCGGTGATGTACTTCCTCGTTTCTACACTGTCTTTCTTTCCAATGTCAGTTCC 60
Query 203 AACTCTTT---GCTGATACCAA-GGTCTTACTACGAACATTTACCGCGTCGTTTACCCAA 258
|||||||| ||||||||||| ||| |||||||||||||||||||||||| || |||||
Sbjct 61 AACTCTTTGAAGCTGATACCAAGGGT-TTACTACGAACATTTACCGCGTCGGTTGCCCAA 119
Query 259 AACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCAAGCG 318
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 120 AACAGCGATTCTCACGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGCTGAGCAAGCG 179
Query 319 AGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAAAAGA 378
||||||||||||||| | || |||||||| |||||||||||| |||||||| ||||||||
Sbjct 180 AGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCGGATAACGATCTAAAAGA 239
Query 379 TGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCTATGG 438
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 240 TGGAGAGTTCTTGACGTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATATATGG 299
Query 439 TCGCGGTAG-CTGCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGATGAGT 497
|||||| || ||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 300 TCGCGG-AGAATGCAAAGAGACACGAGCAGTCATTCAAGTTGAAGAGATCTCTGATGAGA 358
Query 498 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGCGGAAG 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGTGGAAG 418
Query 558 AGAACTCTGATGATACTGAAGGTGACAATGATTCTTGTGATAGCGTTGTTGACGTAACTC 617
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 419 AGAACTCTGATGATACAGAAGGTGACAATGATTCTGGTGATAGCGTTGTTGATGTAACAC 478
Query 618 CCATGCCAGTGGAAGAGATAAGTGATGCAAGTGATAGTGACT 659
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct 479 CCATGCCAGTGGAAGAGATAAGTGATGCGAGTGAGAGTGACT 520
> Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494
Length=1026
Score = 399 bits (216), Expect = 1e-110
Identities = 335/391 (86%), Gaps = 13/391 (3%)
Strand=Plus/Plus
Query 138 CTTCAATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTT-CT-TTCCTGTGT 195
|||| ||||||||| ||||||| |||||||| |||| |||||| ||| || | || ||
Sbjct 41 CTTCCATGGCTTCCAGTGATGTTCTTCCTCGATTCTTCACTGT-TTTCCTCTCCCAGT-A 98
Query 196 CAGTTCC-AACTCTTTGCTGATACCAAGGTCTTACTACGAACATTTACCGCGTCGTTTAC 254
||| ||| || || || |||||||| | |||||||||||||||||||| ||||| || |
Sbjct 99 CAGCTCCGAA-TCCATGGTGATACCACGTTCTTACTACGAACATTTACCACGTCGGTTGC 157
Query 255 CCAAAACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCA 314
||||||| || |||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 158 CCAAAACTGCCATTCTCGTGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGACGAGCA 217
Query 315 AGCGAGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAA 374
|||||||||||||||||| | || |||||||| |||||||||||| ||||||||| |||
Sbjct 218 GGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCTGATAACGAGTTAA 277
Query 375 AAGATGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCT 434
|||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 278 AAGATGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATCT 337
Query 435 ATGGTCGCGGTAGCT-GCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGAT 493
||||||| || || | |||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 338 ATGGTCGTGG-AGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGATCTCTGAT 396
Query 494 GA-G-T-CAGAA-AGTGACAACGATTCTCTT 520
|| | | ||||| | | ||| || |||||||
Sbjct 397 GACGATACAGAAGATT-ACAGCGTTTCTCTT 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5