BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06220.1 Length=723 Score E Sequences producing significant alignments: (Bits) Value Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500 763 0.0 Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494 399 1e-110 > Ahg317484 jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500 Length=528 Score = 763 bits (413), Expect = 0.0 Identities = 487/522 (93%), Gaps = 7/522 (1%) Strand=Plus/Plus Query 143 ATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTTCTTTCCTGTGTCAGTTCC 202 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1 ATGGCTTCCGGTGATGTACTTCCTCGTTTCTACACTGTCTTTCTTTCCAATGTCAGTTCC 60 Query 203 AACTCTTT---GCTGATACCAA-GGTCTTACTACGAACATTTACCGCGTCGTTTACCCAA 258 |||||||| ||||||||||| ||| |||||||||||||||||||||||| || ||||| Sbjct 61 AACTCTTTGAAGCTGATACCAAGGGT-TTACTACGAACATTTACCGCGTCGGTTGCCCAA 119 Query 259 AACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCAAGCG 318 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 120 AACAGCGATTCTCACGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGCTGAGCAAGCG 179 Query 319 AGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAAAAGA 378 ||||||||||||||| | || |||||||| |||||||||||| |||||||| |||||||| Sbjct 180 AGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCGGATAACGATCTAAAAGA 239 Query 379 TGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCTATGG 438 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| Sbjct 240 TGGAGAGTTCTTGACGTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATATATGG 299 Query 439 TCGCGGTAG-CTGCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGATGAGT 497 |||||| || ||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 300 TCGCGG-AGAATGCAAAGAGACACGAGCAGTCATTCAAGTTGAAGAGATCTCTGATGAGA 358 Query 498 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGCGGAAG 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 359 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGTGGAAG 418 Query 558 AGAACTCTGATGATACTGAAGGTGACAATGATTCTTGTGATAGCGTTGTTGACGTAACTC 617 |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| | Sbjct 419 AGAACTCTGATGATACAGAAGGTGACAATGATTCTGGTGATAGCGTTGTTGATGTAACAC 478 Query 618 CCATGCCAGTGGAAGAGATAAGTGATGCAAGTGATAGTGACT 659 |||||||||||||||||||||||||||| ||||| ||||||| Sbjct 479 CCATGCCAGTGGAAGAGATAAGTGATGCGAGTGAGAGTGACT 520 > Ahg317478 jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494 Length=1026 Score = 399 bits (216), Expect = 1e-110 Identities = 335/391 (86%), Gaps = 13/391 (3%) Strand=Plus/Plus Query 138 CTTCAATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTT-CT-TTCCTGTGT 195 |||| ||||||||| ||||||| |||||||| |||| |||||| ||| || | || || Sbjct 41 CTTCCATGGCTTCCAGTGATGTTCTTCCTCGATTCTTCACTGT-TTTCCTCTCCCAGT-A 98 Query 196 CAGTTCC-AACTCTTTGCTGATACCAAGGTCTTACTACGAACATTTACCGCGTCGTTTAC 254 ||| ||| || || || |||||||| | |||||||||||||||||||| ||||| || | Sbjct 99 CAGCTCCGAA-TCCATGGTGATACCACGTTCTTACTACGAACATTTACCACGTCGGTTGC 157 Query 255 CCAAAACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCA 314 ||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct 158 CCAAAACTGCCATTCTCGTGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGACGAGCA 217 Query 315 AGCGAGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAA 374 |||||||||||||||||| | || |||||||| |||||||||||| ||||||||| ||| Sbjct 218 GGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCTGATAACGAGTTAA 277 Query 375 AAGATGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCT 434 |||||||||| ||||| || ||||| ||||||||| |||||||||||||||||||||||| Sbjct 278 AAGATGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATCT 337 Query 435 ATGGTCGCGGTAGCT-GCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGAT 493 ||||||| || || | |||||||||| ||||||||| |||| |||||||||||||||||| Sbjct 338 ATGGTCGTGG-AGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGATCTCTGAT 396 Query 494 GA-G-T-CAGAA-AGTGACAACGATTCTCTT 520 || | | ||||| | | ||| || ||||||| Sbjct 397 GACGATACAGAAGATT-ACAGCGTTTCTCTT 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26609796066 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5