BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06230.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477923 jgi|Araly1|477923|fgenesh2_kg.3__624__AT3G06230.1 1070 0.0
> Ahg477923 jgi|Araly1|477923|fgenesh2_kg.3__624__AT3G06230.1
Length=760
Score = 1070 bits (579), Expect = 0.0
Identities = 702/761 (92%), Gaps = 9/761 (1%)
Strand=Plus/Plus
Query 1 ATGGTTATG-GTTAGAGATAATCAATTCCTTAACCTCAAACTGTCTCCTATACAAGCTCC 59
||||||| | ||||||||| ||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGTTA-GAGTTAGAGATCATCGATTTCTTAATCTCAAGGTGTCTCCTATACAAGCTCC 59
Query 60 TACTACTATCCCCCCTTGCCGCTTCCCCATCATACCCGCTACAAAAGTCTCTGCAACAGT 119
||||||||||| |||||||||| |||||||| || |||||| ||||| ||||||||||||
Sbjct 60 TACTACTATCCTCCCTTGCCGCCTCCCCATCGTAGCCGCTAAAAAAGCCTCTGCAACAGT 119
Query 120 TTCTTCCTGCGCAAGCAACACTTTTTCTGTAGCTAATTTGGACAGAATCAGTGTTCTTGG 179
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 120 TTCTTCCTGCGCAAGCAACAGTTTTTCTGTAGCTAATTTGGACAGAATCAATGTTCTAGG 179
Query 180 CAGTGGAAACGGAGGAACCGTATTCAAAGTTAAGGACAAGACAACCTCAGAGATCTACGC 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 180 CAGTGGAAACGGAGGAACCGTATTCAAAGTTAAAGACAAGACAACCTCAGAGATCTATGC 239
Query 240 GTTGAAGAAAGTGAAAGAAAAC-TGGGATTCTACTT--CCCT-CCGTGAGATCGAAATCC 295
|||||||||| | ||||||||| | ||||||||||| |||| ||| |||||||||||||
Sbjct 240 GTTGAAGAAAATCAAAGAAAACAT-GGATTCTACTTCCCCCTGCCGCGAGATCGAAATCC 298
Query 296 TTCGCATGGTCAACTCTCCTTACGTCGCAAAGTGTCACGACATCTTCCAGAATCCTTCCG 355
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 TTCGCGTAGTCAACTCTCCTTACGTCGTAAAGTGTCACGACATCTTCCAGAATCCTTCCG 358
Query 356 GAGAAGTATCTATTCTAATGGATTACATGGATCTTGGCT-CGCTCGAGTCTCTACGCGGG 414
|||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||
Sbjct 359 GAGAAGTATCTATTCTAATGGAATACATGGATCTTGG-TACGCTCGAGTCTCTAAGCGGT 417
Query 415 GTTACAGAAAAACAACTCGCTTTGATGTCTCGTCAAGTTTTGGAAGGAAAAAATTACTTG 474
||| |||| || ||||| ||||||||| ||||||| ||||||||||| ||| ||||||
Sbjct 418 GTTTCAGAGAACCAACTAGCTTTGATGGCTCGTCAGGTTTTGGAAGGGTTAAACTACTTG 477
Query 475 CACGAGCACAAGATCGTTCATAGAGACATCAAGCCAGCGAATCTGCTACGTAGCTCAAAA 534
||||||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||
Sbjct 478 CACGAGCACAAGATCGTACATAGAGATATTAAGCCAGCGAACCTGCTACGTAGCTCGAAA 537
Query 535 GAAGAAGTCAAGATCGCAGACTTTGGAGTGAGCAAGATCGTGGTCAGGTCTTTAAACAAG 594
||||||||||| ||| | |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 538 GAAGAAGTCAAAATCACTGACTTTGGAGTGAGCAAGATCGTGGTCAAGTCTTTCAACAAG 597
Query 595 TGCAACTCGTTCGTAGGCACGTTCGCATACATGAGTCCTGAAAGACTCGATAGTGAAGCT 654
|||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 598 TGCAACTCGTTCGTCGGCACGTACGCCTACATGAGTCCTGAGAGACTCGATAGTGAAGCT 657
Query 655 GATGGTGTTACAGAAGAAGACAAATCAAACGTTTACGCCGGAGATATATGGAGTTTTGGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GATGGTGTTACAGAAGAAGACAAATCAAACGTTTACGCCGGAGATATATGGAGTTTTGGG 717
Query 715 CTTACGATGCTCGAGATCTTGGTGGGTTACTACCCGATGCT 755
|||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTACGATGCTCGAGATCTTGGTGGGTTACTACCCGATGCT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5