BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06240.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477924 jgi|Araly1|477924|fgenesh2_kg.3__625__AT3G06240.1 2300 0.0
> Ahg477924 jgi|Araly1|477924|fgenesh2_kg.3__625__AT3G06240.1
Length=1618
Score = 2300 bits (1245), Expect = 0.0
Identities = 1465/1571 (93%), Gaps = 16/1571 (1%)
Strand=Plus/Plus
Query 74 TTATATCTAATAATTAATTTAAAGAGAAAATTTATAAAAGTTTATTAGAGCAAATAACTC 133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 55 TTATATCTAATAATTAATTTAAAGAGAAAATTTACAAAAGTTTATTAGAGCAAATAACTC 114
Query 134 AAACTCGGATTTTATAGTCGTTATGACCCGGTTTGACTAT-TGAACCGTTTAACCGAGAA 192
|||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| |||
Sbjct 115 AAACTC---TTTTATAGTCGTTATCACCCGGTTTGACTATAT-AACCGTTTAACCGGGAA 170
Query 193 ATTGGGACTCAATTAAGACAACCGAAACTAGACCCGGATCCAGTGTTAGCGGGCTAGATT 252
||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct 171 ATTGGGATTGAATTAAGACAACCGAAATTAGACCCGGATCCAGTGTTACCGGGCTAAATT 230
Query 253 AAGGTGTCGGGTCATAGCGGAGAAGCAACCAGACGCCAACAAT-GAA---A-GCGATCCA 307
|||||||||||||||||| ||||||| |||||||| ||| || ||| | ||||||||
Sbjct 231 AAGGTGTCGGGTCATAGCAGAGAAGCTGCCAGACGCTAACGATCGAATGGATGCGATCCA 290
Query 308 GTTGCTGTGGGAAGCGATAATGGAGGCGACGAAGAGAGAAAGACGGAGAGAAGATGACGA 367
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 291 GTTGCTGTGGGAAGCGATAATGAAAGCGACGAAGAAAGAAAGACGGAGAGAAGATGACGA 350
Query 368 CGGCGAAAAAGCTTCACCGGAATCACTCGTTCTTCCACCAGAGATCATTACAGAAATTCT 427
||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 351 CGGCGAAGAAGCTTCAACGGAATCACTCGTCCTTCCTCCAGAGATCATTACAGAAATTCT 410
Query 428 TCTCCGATTACCAGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTCTTTTGCAC 487
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 411 TCTCCGATTACCGGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTATTTTACTC 470
Query 488 TTTATCGTCAGATCCAGGGTTCGCGAAGATTCACCTCGATCTGATCCTTCGAAACGAATC 547
| | || || |||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 471 TCTGTCTTCGGATCCAGGATTCGCGAAGAATCACCTCGATCTGATCCTTCGAAACGACGC 530
Query 548 CGTAAGATCGCTCCACCGTAAGCTCATTGTGTCTTCACATAATCTGTACTCGTTAGATTT 607
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 531 CGTAAGATCGCTCCACCGTAAGCTCATCGTGTCTTCACATAATCTATACTCTTTAGATTT 590
Query 608 CAATTCGATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACACAATTATCCTCTTAA 667
| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 591 CGATTCAATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACTCAATTATCCTCTTAA 650
Query 668 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGGGGGACCATCTGTACGA 727
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 651 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGAGAGAGCATCTGTACGA 710
Query 728 TGATCGTCGCGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 787
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGATCGTCGTGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 770
Query 788 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTTTCTTGTA 847
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 771 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTATCTTGTA 830
Query 848 TAATCCAACTACCGGAGATTCCAAGAGATTACCTGAAAATTTTCGTCCCAAATCTGTAGA 907
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 831 TAATCCAACCACCGGAGATTCCAAGAGATTACCTGAAACTTTGCGTCCCAAATCTGTAGA 890
Query 908 ATACGAAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGGTCTCACTGATGATTA 967
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 891 ATACGGAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGATCTCACTGATGATTA 950
Query 968 CAAATTGGTGAAGCTTGTTGCTACCAGTGAAGATATTCTCGATGCTAGTGTCTATTCCTT 1027
|||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 951 CAAAGTGGTGAAGCTTGTTGCTACCAGTGACGATATTCTTGGTGCTAGTGTCTATTCCTT 1010
Query 1028 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAGCACAACGATGGCTCCTA 1087
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1011 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAACACAACGATGGCTTCTA 1070
Query 1088 CACGTCCGGTGTGCATTTCAACGGTGCGATTCACTGGGTGTTCACAGAGAGTAGGCACAA 1147
|||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||
Sbjct 1071 CACGTCCGGTGTACATTTCAACGGTGCGATTCACTGGGTTTTCGCAGAGATTAGCCACAG 1130
Query 1148 CCAAAGAGTGGTTGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCAGTGCC 1207
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1131 CCAAAGAGTGGTCGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCATTGCC 1190
Query 1208 TGATGAAGCTGAAGATTGTTC-CCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAATG 1266
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1191 TGATGAAGCTGAAGATTGT-CACCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAGTG 1249
Query 1267 GACGTCTCTGTGTGGTCAATAGTTGCTACGATGT-GCATGATGATATATGGGTGATGAGT 1325
||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||
Sbjct 1250 GACGTCTCTGTGTGGTCAATAGTTGCTACGA-GCAGCACGATGATATATGGCTGATGAGT 1308
Query 1326 GAGTACGGTGAAGCTAAATCCTGGAGCAGAATTCGAATCAACTTGTTGTATAGGTCGATG 1385
|||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||
Sbjct 1309 GAGTACGGTGAAGCTAAATCATGGAGCCGAATCCGGATCAACTTGTTGTATAGGTCGATG 1368
Query 1386 AAACCGCTCTGTTCGACTAAGAACGATGAAGAGGTTCTTCTGGAGCTTGATGGAGACCTG 1445
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1369 AAACCGCTGTGTTCGACTAAGAAGGATGAAGAGGTTCTTCTAGAGCTTGATGGAGACATG 1428
Query 1446 GTGTTGTACAACTTTGAAACCAATGCATCGAGTAATCTAGGAATTTGTGGGGTTAAGCTC 1505
||||||||||||||||| |||||||||||||||||||| |||||| | ||| |||||||
Sbjct 1429 GTGTTGTACAACTTTGAGACCAATGCATCGAGTAATCTGGGAATTCGCGGGATTAAGCTT 1488
Query 1506 AGTGACGGGTTCGAGGCAAATACATACGTAGAGAGCCTCATATCACCCAACTCTTATGGT 1565
|||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1489 AGTGACGGATTTGAGGCCAATACGTACGTAGAGAGCCTCATATCACCCAACCCTTGTGGT 1548
Query 1566 ATAGAGAGCTGAGGAAGTCTGCTTTTTGCTAAGA-TATAATAAACCAACATTCGGATTAG 1624
| ||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1549 AGAGAGAGCTGAGAAAGTCTGCTTTCT-CTAAGAATATAATAAACCAACATTCGGATTAG 1607
Query 1625 AAATGTTTTAG 1635
||||||||||
Sbjct 1608 CAATGTTTTAG 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5