BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06260.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477926 jgi|Araly1|477926|fgenesh2_kg.3__627__AT3G06260.1 1772 0.0
> Ahg477926 jgi|Araly1|477926|fgenesh2_kg.3__627__AT3G06260.1
Length=1333
Score = 1772 bits (959), Expect = 0.0
Identities = 1028/1062 (97%), Gaps = 1/1062 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCAAGGAGCCTCTCCTATACACAACTCCTAGGCCTCCTGTCCTTTATACTCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCTCAAGGAGCCTCTCCTATACACAACTCCTAGGCCTCCTGTCCTTTATCCTCCTC 60
Query 61 TTGGTCACAACCACCACTATGGCGGTTCGTGTTGGAGTCATTCTTCATAAGCCTTCTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGGTCACAACCACCACTATGGCGGTTCGTGTTGGAGTCATTCTTCATAAGCCCTCTGCT 120
Query 121 CCAACTCTTCCTGTTTTCAGAGAAGCCCCGGCTTTTCGAAACGGTGATCAATGCGGGACT 180
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 121 CCAACTCTTCCTGTTTTCAGAGAAGCCCCTGCTTTTAGAAACGGTGATCAATGCGGAACC 180
Query 181 CGTGAGGCTGATCAGATTCATATCGCCATGACTCTCGACACAAACTACCTCCGTGGCACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTGAGGCTGATCAGATTCATATCGCCATGACTCTCGACACAAACTACCTCCGTGGCACA 240
Query 241 ATGGCTGCCGTTTTGTCTCTCCTTCAACATTCCACTTGCCCTGAAAACCTCTCTTTTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGCTGCCGTTTTGTCTCTCCTTCAACATTCCACTTGCCCTGAAAACCTCTCTTTTCAT 300
Query 301 TTCCTGTCCCTTCCTCATTTCGAAAACGACCTTTTCACCAGCATCAAATCAACCTTTCCT 360
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTCCTCTCCCTTCCTCATTTCGAAAACGACCTCTTCACCAGCATCAAATCAACCTTTCCT 360
Query 361 TACCTAAACTTCAAGATTTATCAGTTTGATCCAAACCTCGTCCGCAGCAAGATATCGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 TACCTAAACTTCAAGATTTATCAGTTTGATCCAAACCTCGTCCGCAGTAAAATATCGAAA 420
Query 421 TCCATCAGGCAAGCCCTTGATCAGCCTCTTAACTACGCAAGAATCTACCTCGCGGATATC 480
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TCCATCAGGCAAGCCCTCGACCAGCCTCTTAACTACGCGAGAATCTACCTCGCGGATATC 480
Query 481 ATCCCTAGCAGCGTTGACAGGATCATCTACTTAGACTCAGACCTCGTTGTGGTAGACGAC 540
|| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 481 ATTCCTAGTAGCGTTGACAGGATCATCTACTTAGATTCGGACCTCGTTGTGGTAGATGAC 540
Query 541 ATAGAGAAGCTGTGGCATGTGGAGATGGAAGGTAAAGTGGTGGCTGCTCCCGAGTACTGC 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGAGAAGCTGTGGCATGTCGAGATGGAAGGTAAAGTGGTGGCTGCTCCCGAGTACTGC 600
Query 601 CACGCAAACTTCACCCATTATTTCACAAGAACTTTCTGGTCAGACCCGGTATTGGTCAAA 660
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 601 CACGCAAACTTCACCCATTATTTCACAAAAACTTTCTGGTCAGACCCGGTATTGGTGAAA 660
Query 661 GTTCTTGAAGGAAAACGTCCGTGTTATTTCAACACAGGGGTGATGGTTGTGGATGTAAAC 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTCTTGAAGGAAAACGCCCGTGTTATTTCAACACAGGGGTGATGGTTGTGGATGTAAAC 720
Query 721 AAATGGAGGAAAGGAATGTATACACAGAAGGTAGAAGAGTGGATGACAATTCAGAAGCAG 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 AAATGGAGGAAAGGAATGTATACACAGAAGGTAGAAGAATGGATGACAATTCAGAAGCAG 780
Query 781 AAGAGGATATACCATTTGGGATCATTACCTCCGTTTCTGCTGATATTCGCCGGTGATATA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AAGAGGATATACCATTTGGGATCATTGCCTCCGTTTCTGCTGATATTCGCCGGTGATATA 840
Query 841 AAAGCGGTTAATCATAGGTGGAACCAGCATGGTCTAGGAGGTGATAATTTCGAAGGAAGA 900
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 841 AAAGCGGTTAATCATAGGTGGAACCAGCACGGCCTCGGAGGGGATAATTTCGAAGGAAGA 900
Query 901 TGTAGAACGTTGCATCCGGGACCGATAAGTCTTCTTCACTGGAGTGGAAAAGGGAAGCCA 960
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 901 TGTAGAACGTTGCATCCGGGACCGATAAGTCTACTTCATTGGAGCGGAAAAGGGAAGCCA 960
Query 961 TGGTTAAGACTAGATTCAAGGAAGCCTTGTATCGTTGATCATCTATGGGCACCGTATGAT 1020
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 TGGTTGAGACTAGATTCAAGGAAGCCTTGTATCGTTGATCATCTATGGGCTCCGTATGAT 1020
Query 1021 CTGTACCGTTCATCAAGACATTCATTAGAAGAGTAGAG-AGG 1061
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 CTGTACCGTTCATCAAGACATTCATTAGAAGAGTAGAGTAGG 1062
Score = 392 bits (212), Expect = 3e-108
Identities = 268/291 (92%), Gaps = 19/291 (7%)
Strand=Plus/Plus
Query 1094 TAGGAGAGGAGAAGATACAAAAGAAAGCAGGGGTT-TTTAGCGATCAAAGAGAGCCAAAA 1152
|||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1059 TAGGAGAGGAGAAGATAC-AAACAAAGCAGGGGTTATTTAGCGATCAAAGAGAGCCAAAA 1117
Query 1153 ATGTTTCATTACAAAGTGaaaaaaaGTTGTAATGTTAAACACATTGTTGTGCATTTGAGC 1212
||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1118 ATG-TTCATTACAAAGTG--AAAAAG-TGTAATGTT-AACACATTGTTGTGCATTTGAGC 1172
Query 1213 TCAGAGTGTGTTTCATCACAAGAAGAGATAGATGGTATTATCATCATCATCAtttttttt 1272
||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||
Sbjct 1173 TCAGAGTGTGTTTCATCACAAGA-GA--TAGATGGTGTTATCATCATCAT--TTTTTTT- 1226
Query 1273 ttCTCCTTTCTTCGGTTTTGTTTCCC-TCTCTTTGATTCAAACCTTTAGAATATTCCTCG 1331
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1227 --CTCCTTTCTTCG-TTTT-TTTCCCCTCTCTTTGATTCAAACCTTTAGAATATTCCGCG 1282
Query 1332 TGTAATATACATAGGTACAAACAAAA-TGGAGGATTAAATTCATTCTTTTT 1381
||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1283 TGTAATATACATAGGTACAAAAAAAAATGGAGGATTAAATTCATTCTTTTT 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5