BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06270.1
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477927 jgi|Araly1|477927|fgenesh2_kg.3__628__AT3G06270.1 2689 0.0
> Ahg477927 jgi|Araly1|477927|fgenesh2_kg.3__628__AT3G06270.1
Length=1809
Score = 2689 bits (1456), Expect = 0.0
Identities = 1718/1837 (94%), Gaps = 47/1837 (3%)
Strand=Plus/Plus
Query 1 CGATAATCTCAAAAAGTTTTTGGTTTGATTTGGGAACTCGTGCGCGGCTGTGGCAGAGGC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CGATAATCTCAAAAAGTTTTTGGTTTGATTTGGGAATTCGTGCGCGGCTGTGGCAGAGGC 60
Query 61 CAAACCCACCCGTGTACTCCATCCGTCGGATCCACCAAACCAATATTCTTTCAtctctct 120
|||||||||||||||| ||||||||||||||||||||||||| | || ||| |||||
Sbjct 61 CAAACCCACCCGTGTA--CCATCCGTCGGATCCACCAAACCAA-AGTC--TCA--TCTCT 113
Query 121 ctctctctctctctctcttcttcttcgtcttcttctctttttattctttcttcAGGAACA 180
||||||||||||||||| || || || ||||||||| | || ||| ||| || |||||
Sbjct 114 CTCTCTCTCTCTCTCTC-TC-TC-TC-TCTTCTTCT-TCGTT-TTC-TTC-TC--GAACA 163
Query 181 AATTCCTCTGCTTTGGGCATTTTAGGGTTTCTCAAATTTTTGACGCTTTCTCTTAAAAGG 240
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 164 AATTCCTCTGCTTT-GGCATTTTAGGGTTTCTCAAA-TTTTGACGCTTTCTCTTAAAAGG 221
Query 241 GTTGACGAAATAACCCTTTAAGG-GAAAAAACAAAGGTTGAGGAAGACCACCAAGGTGAA 299
|||||||| |||||||||| || ||||||||||||||||||||||||| |||| | |||
Sbjct 222 GTTGACGACATAACCCTTT-GGGAGAAAAAACAAAGGTTGAGGAAGACCCCCAA-G-GAA 278
Query 300 AAAAGAAAGAAGAATTCG---------AACAACAGCAGCAACAAGATAAAGTTACGAAtt 350
|||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 279 AAAAGAAAGAAGAATTCGAACAACAACAACAACAACAACAACAAGATAAAGTTACGAATT 338
Query 351 tttcctcttttgtaacctttgtttctcttcttcctcttcctccatttttttCCATTAAAG 410
|| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 339 TTCCCTC-TTTGTAACCTTTGTTTCTCTTCTTCCTCTTCCTCTACTTTTTTCCA-TAAAG 396
Query 411 ATTCTGCCTTTGGGTTCCAATTTCGTCTTTCCTTTTTCGATTTTGCCGCGTTTAACATGA 470
||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 397 ATTCTGCCTTTGGATTTCAATTTCGTC-TTCCTTTTTCGATTTTGCCGCGTTTAACATGA 455
Query 471 CATTC-GCAAAACCCTACACTTTTCTGGACGCCATTGTTGAATCCCACGAATTTCGTTTC 529
|| || |||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 456 CA-TCTGCAAAACCCTACCCTTTTGTGGACGCCATTGTTGATTCCCACGAATTTCGTTTT 514
Query 530 CCTAGAGATTGCTTGTTCTAGCCCCAGCTTGAAGCTAAAGATTTTTCAAGGAAAG-CACG 588
|||||||||||||||||||||||| |||| | |||| ||||||||| |||||||| ||
Sbjct 515 CCTAGAGATTGCTTGTTCTAGCCCGAGCTAGGAGCTCAAGATTTTTGAAGGAAAGTTTCG 574
Query 589 ---ttttttt-GTTTGTGC--AATCGAATCTGTTTTTCTGCGTTATGGGTTGTGTTCAAT 642
||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 575 TTTTTTTTTTCTTTTTTGCGGAATCGAATCTG-TTTTCTGCGTTATGGGTTGTGTTCAAT 633
Query 643 GCAAATGTTGTAGCCGATATCCTTCGTCATCATCAGATGGAGATTCTCGTGGACCTTTAG 702
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 634 GCAAATGTTGTAGCCGATATCCGTCGTCATCATCAGATGGAGATTCTCGGGGACCTTTAG 693
Query 703 AAGCCAATGGTGTTCTTAAGGGGAAAGATCAGAAACCTCTTGGATCTATTCACGTTCCTT 762
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AAGCCAATGGTGTTCTCAAAGGGAAAGATCAGAAACCTCTTGGATCTATTCACGTTCCTT 753
Query 763 CTCCTAATTTCGATATGGTTTACTCTGTGTTATCTCAACGAGGCTATTACCCTGACTCAC 822
||||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 754 CTCCTAATTTCGACATGGTTTACTCTGTCTTATCTCAACGAGGCTACTATCCTGATTCAC 813
Query 823 CTGATAAGGAGAATCAAGACACTTACTGCATCAAAACAGAGCTTCAAGGTAACCCGAATG 882
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 CTGATAAAGAGAATCAAGACACTTACTGCATCAAAACCGAGCTTCAAGGTAACCCGAATG 873
Query 883 TTCATTTCTTCGGTGTCTTTGATGGTCACGGTGTGTTGGGTACGCAGTGTTCGAATTTTG 942
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 874 TTCATTTCTTCGGTGTCTTTGATGGTCACGGTGTGTTTGGTACGCAGTGTTCGAATTTTG 933
Query 943 TTAAGGAGAGGGTTGTGGAAATGTTGTCTGAAGACCCAACTCTGCTTGAGGATCCGGAGA 1002
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 934 TCAAGGAGAGGGTTGTGGAAATGTTGTCTGAAGACCCAACTCTGCTTGAGGATCCTGAGA 993
Query 1003 AAGCTTACAAGTCTGCTTTTTTGAGGGTTAATGAAGAGTTACACGATAGTGAAATCGACG 1062
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 994 AAGCTTACAAGTCTGCTTTTTTAAGGGTTAATGAGGAGTTACATGATAGTGAAATCGATG 1053
Query 1063 ATTCGATGAGTGGTACTACTGCCATTACGGTTCTTGTTGTTGGGGATAAGATTTATGTTG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATTCGATGAGTGGTACTACTGCCATTACGGTTCTTGTTGTTGGGGATAAGATTTATGTTG 1113
Query 1123 CCAATGTAGGAGATTCGAGGGCGGTTCTCGCTGTTAAAGACAGGAATCGGATTCTAGCAG 1182
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1114 CCAATGTAGGGGATTCGAGGGCGGTTCTTGCTGTTAAAGACAGGAATCGGATTCTGGCAG 1173
Query 1183 AGGATTTGTCTTACGATCAAACGCCTTTTAGGAAAGATGAATGCGAGAGGGTTAAAGCTT 1242
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGGATTTGTCTTATGATCAGACGCCTTTTAGGAAAGATGAATGCGAGAGGGTTAAAGCTT 1233
Query 1243 GTGGAGCTAGAGTGCTGAGTGTGGATCAAGTGGAAGGGTTGAAAGATCCGAATATACAAA 1302
|||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1234 GTGGTGCTAGAGTGCTGAGTGTGGATCAAGTGGAAGGACTGAAAGATCCAAATATACAAA 1293
Query 1303 CATGGGCAAACGAAGAGAGTGAAGGAGGAGATCCGCCGAGACTTTGGGTACAAAACGGGA 1362
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1294 CATGGGCAAACGAAGAGAGCGAAGGAGGTGATCCGCCGAGACTTTGGGTACAAAACGGGA 1353
Query 1363 TGTATCCGGGAACCGCATTCACGAGGAGTGTTGGTGATTTTACAGCTGAGAGCATTGGAG 1422
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1354 TGTATCCGGGAACCGCATTTACAAGGAGTGTTGGAGATTTTACAGCTGAGAGCATTGGAG 1413
Query 1423 TTATTGCAGAGCCAGAAGTGTCAATGGTTCATCTCTCGCCTAACCATTTGTTCTTTGTTG 1482
||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1414 TTACTGCAGAACCAGAAGTGTCAATGGTTCATCTTTCGCCTAACCATTTGTTCTTTGTTG 1473
Query 1483 TTGCAAGCGATGGGATTTTCGAGTTTCTTCCAAGCCAAGCTGTTGTTGATATGGTGGGGA 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TTGCAAGCGATGGGATTTTCGAGTTTCTTCCAAGCCAAGCTGTTGTTGATATGGTGGGGA 1533
Query 1543 GATACGCAGATCCGCGCGATGGATGCGCTGCAGCAGCAGCGGAATCATATAAACTGTGGT 1602
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1534 GATACGCTGATCCGCGCGATGGATGCGCTGCAGCTGCAGCGGAATCATACAAACTGTGGT 1593
Query 1603 TGGAGCATGAGAATAGGACAGATGATATCACAATTATCATTGTACAGATTAAAAAGCTGT 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 TGGAGCATGAGAATAGGACAGATGATATCACAATTATCATTGTACAGATTAAAAAGCTGT 1653
Query 1663 CTAATGAATGATGCACATTCCTATTTGCCCCTTTGTTTGATTTTTCTGTACTGTAATGTT 1722
|||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1654 CTAATGAATGATTCATATTCCTATTTGCCCCTTTGTTTGATTCTTCTGTACTGTA-TGTC 1712
Query 1723 ACAGGTTTCATCCAACTATATAGCAAAGTTAAAAGTAATGCTCTCTCTTTTGTGTATGAG 1782
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 ACAGATTCCATCCAACTATATAGCAAAGTTAAAAGTAATGCTCTCTCTTTTGTGTATGAG 1772
Query 1783 CTTCTTTTACCAA-GATTAAATGACGTGTTTAATACG 1818
||||||||||||| |||||||||||||||||| ||||
Sbjct 1773 CTTCTTTTACCAAAGATTAAATGACGTGTTTACTACG 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68333899530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5