BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06280.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903494 jgi|Araly1|903494|Al_scaffold_0003_622 527 4e-149
> Ahg903494 jgi|Araly1|903494|Al_scaffold_0003_622
Length=585
Score = 527 bits (285), Expect = 4e-149
Identities = 511/613 (83%), Gaps = 44/613 (7%)
Strand=Plus/Plus
Query 1 ATGGagaaacaagaagaagaagatgtg-a-ag-agaa-gacaaagacaaaaagCAGCAAC 56
||||||||||||||||||||||| ||| | || |||| ||||| |||||||| |||||||
Sbjct 1 ATGGAGAAACAAGAAGAAGAAGAGGTGAAGAGAAGAAGGACAAGGACAAAAAACAGCAAC 60
Query 57 CAGCCTCGGGTTCTTACATTGGGAAGAGCTAAAAAATCATGGAGATTTATCCAAGGTAGC 116
|| ||||||||||||||||||||| |||| || |||||||||||| ||| ||||||||
Sbjct 61 CATCCTCGGGTTCTTACATTGGGATCAGCTCAAGAATCATGGAGATCCATCAAAGGTAGC 120
Query 117 TTTGAACATTGCCCTTACTACCCTCGTGGACGATGCATCAACGGGGTTCTGTATTATGAA 176
|||||||||| | ||||| | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 121 TTTGAACATTACTCTTAC-A--CTCATGGACAATGCATCAACGGGGTTCTGTATTATGAA 177
Query 177 TCTGGTGAATTTGATCGT-GCTCAGGGAAAGTTCCCAAGGTTACCTCTTAACTTACGAGG 235
|| ||| || | | | || ||| | | | || || || | | | |
Sbjct 178 TC-------TTT--TCTTAAAT-A-TGATAGTGCTC-A---TAGCT-TT-A--T---A-G 214
Query 236 GAAAGTTAGCTTCTCTTGCTT-CTGCAACCTATGTGAAAGCCTTTATTTCACTATGGGTT 294
|||||||||||||||||| || || ||||| || || | |||||||||||||||||||||
Sbjct 215 GAAAGTTAGCTTCTCTTGTTTACT-CAACCAATATGGATGCCTTTATTTCACTATGGGTT 273
Query 295 CTGGAGGATGCAGAGAGACATGCGTGGTCGTTTAGAACATTTTCTTTAACTTTTCCACTC 354
|||| ||||||||||| |||| |||||||||||||| |||||||||| ||||||| ||
Sbjct 274 TTGGAAGATGCAGAGAGCCATGAGTGGTCGTTTAGAATATTTTCTTTACCTTTTCCTCTA 333
Query 355 GATGATCCAATTTTGGACACCTTTTTAGA-ACTAACGGGTGTGACTGAAGCCGGTGAGTT 413
||||||||||||| | ||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 334 GATGATCCAATTTCGCACACCCTTTTA-ATACTAACGGGTGTGACTGAAGCCGGTGAGTT 392
Query 414 TGTTTACGCACCAACAACTTTGCAGAGTCCGTTTCATGCTCTGTATTTCGATCCACAGAG 473
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
Sbjct 393 TGTTTACGCACCAACAACTCTGGAGAATCCGTTTCATGCTCTGTATTTCGATCCACAGCG 452
Query 474 AAACAGCTTTAGAAGAGTCATATATGAAGGACTCGCGGACGACGAATTTAGGCGACGTAA 533
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||
Sbjct 453 AAACAGCTTTAGAAGAGTCATATATGAAGGAATTGCGGACAACGAATTTAGGCGACGCAA 512
Query 534 TAGACTTGGATACGAACGTCACC--A---TA--T-TCTT-CCCAATCACATAGAGAGTCT 584
| |||||||| || ||| || || | || | | || ||||||||| ||| ||||||
Sbjct 513 TGGACTTGGAAACAAACCTCTCCGTAGGCTACATATATTTCCCAATCACGTAGGGAGTCT 572
Query 585 CATTTCTTTGTAA 597
|| ||||| |||
Sbjct 573 TATGTCTTTCTAA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5