BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06300.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928254 jgi|Araly1|928254|scaffold_300711.1 1548 0.0
Ahg488774 jgi|Araly1|488774|fgenesh2_kg.6__1908__AT5G18900.1 893 0.0
Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739 95.3 9e-19
> Ahg928254 jgi|Araly1|928254|scaffold_300711.1
Length=940
Score = 1548 bits (838), Expect = 0.0
Identities = 908/942 (96%), Gaps = 4/942 (0%)
Strand=Plus/Plus
Query 144 AATTACTACGA-TTGCTATAATGTCGATGTCTCGGCTCGGATTGTTGTTGTTCGTCGCTA 202
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTACTACGATTTGCTATAATGTCGATGTCTCGGCTCGGATTGTTGTTGTTCGTCGCTA 60
Query 203 TATTGCTCGTCTTGCTTCAGTCTTCCACTTGTCTGATTAGTTCTCCAAGTTCTATCATCA 262
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATTCCTCGTCCTGCTTCAATCTTCCACTTGTCTGATTAGTTCTCCAAGTTCTATCATCA 120
Query 263 ATCCTTCTAAAGTCAAACAGGTTTCGTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTT 322
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 ACCCTTCTAAAGTCAAACAGGTTTCTTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTT 180
Query 323 TGACGGACTTGGAATGTGATCATCTAATCTCTCTTGCGAAAGAGAATCTGCAGAGATCTG 382
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TGACGGACTTGGAATGTGATCATCTAATCTCCCTTGCGAAAGAGAATCTGCAGAGATCTG 240
Query 383 CGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGATGTTCGTACCAGCTCCGGCA 442
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGACGTTCGTACCAGCTCCGGCA 300
Query 443 CTTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACAT 502
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 CGTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCGGTATAGAGGACAAGCTCTCAACAT 360
Query 503 GGACATTTCTCCCAAAAGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTC 562
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGACATTCCTCCCAAAAGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTC 420
Query 563 AGAAATATGATGCTCACTTTGACTACTTCCACGACAAAGTCAACATTGCCCGTGGTGGAC 622
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AGAAATATGATGCCCACTTTGACTACTTCCACGACAAAGTCAACATCGCCCGTGGTGGAC 480
Query 623 ACCGCATAGCAACGGTTCTCTTGTATCTGTCCAATGTCACAAAGGGTGGAGAAACTGTTT 682
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 481 ACCGCATAGCAACGGTTCTCTTGTATCTATCTAATGTCACAAAGGGTGGAGAAACGGTTT 540
Query 683 TCCCCGATGCACAGGAAT-TCTCTCGCCGCTCGCTTTCTGAGAATAAAGACGATCTTTCT 741
| |||||||||||||||| | || |||||||||||||||||||| |||||||||||||||
Sbjct 541 TTCCCGATGCACAGGAATAT-TCACGCCGCTCGCTTTCTGAGAACAAAGACGATCTTTCT 599
Query 742 GATTGTGCAAAGAAAGGAATCGCTGTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATTGTGCAAAGAAAGGAATCGCTGTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTC 659
Query 802 AACCTCCAACAAGACGCAATCCCAGACCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATC 861
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 AACCTCCAACAAGACGCAATCCCAGATCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATC 719
Query 862 GAAGGAGAGAAATGGTCGGCTACTAAGTGGATCCACGTGGACTCATTCGATAAGATATTG 921
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGGAGAGAAATGGTCGGCTACAAAGTGGATCCACGTGGACTCATTCGATAAGATATTG 779
Query 922 ACACATGATGGTAACTGTACTGACGTAAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGA 981
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 780 ACACATGATGGTAACTGTACGGACGTGAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGA 839
Query 982 GAATGTGGAAAGAATCCAGAGTATATGGTTGGAACTCCAGAGATCCCTGGGAATTGCAGA 1041
||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 840 GAATGCGGAAAGAACCCAGAGTATATGGTTGGAACTCCAGAGCTCCCTGGAAATTGCAGA 899
Query 1042 CGTAGCTGTAAAGCTTGTTAAAGACTTTAAACTCCTCTTTTT 1083
| |||||||||||||||||||||| || ||| | ||||||||
Sbjct 900 CATAGCTGTAAAGCTTGTTAAAGAGTT-AAATTTCTCTTTTT 940
> Ahg488774 jgi|Araly1|488774|fgenesh2_kg.6__1908__AT5G18900.1
Length=1219
Score = 893 bits (483), Expect = 0.0
Identities = 760/892 (85%), Gaps = 26/892 (3%)
Strand=Plus/Plus
Query 183 ATTGTTGTTGTTCGTCGCTATATTGCT-CGTCTTGCTTCAGTCTTCCACTTGTCTGATTA 241
||||||||||||| | ||||| || || |||| ||||||| || ||||||| |||||||
Sbjct 148 ATTGTTGTTGTTCTTTGCTATCTT-CTCCGTCCTGCTTCAATCCTCCACTTCCCTGATTA 206
Query 242 GTT-CTCCAAG-TTCTATCATCAATCCTTCTAAAGTCAAACAGGTTTCGTCGAAGCCCAG 299
||| || | || ||| ||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct 207 GTTCCT-CTAGCGTCT-TCATCAATCCTTCCAAAGTCAAGCAGGTTTCATCGAAACCCAG 264
Query 300 GGCATTTGTGTATGAAGGTTTTTTGACGGACTTGGAATGTGATCATCTAATCTCTCTTGC 359
||| |||||||||||||| ||| | ||||| ||||||||||||||| | | ||||||||
Sbjct 265 GGCGTTTGTGTATGAAGGGTTTCTCACGGAATTGGAATGTGATCATATGGTTTCTCTTGC 324
Query 360 GAAAGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGATAATGGCGAGAGTC-AAGTCA 418
|||| || ||| |||||||||| ||||||||||| |||| ||| ||||| | || |||
Sbjct 325 AAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGATAATGATAGTGGAGAGAG-CAAATTCA 383
Query 419 GTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCG 478
| || ||||| |||||||| ||||| |||||| |||||||||||||||| |||||||| |
Sbjct 384 GCGAGGTTCGAACCAGCTCTGGCACGTTTATCCCCAAAGGAAAGGATCCCATTGTTTCTG 443
Query 479 GTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGAAAACGGGGAAGACCTTC 538
|||| || |||||| |||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 444 GTATAGAAGACAAGATCTCCACTTGGACATTTCTTCCAAAAGAAAACGGGGAAGATATTC 503
Query 539 AGGTATTGAGATATGAGCACGGTCAGAAATATGATGCTCACTTTGACTACTTCCACGACA 598
||||||||||||| |||||||| || ||||| |||||||||||||||||||| || ||||
Sbjct 504 AGGTATTGAGATACGAGCACGGACAAAAATACGATGCTCACTTTGACTACTTTCATGACA 563
Query 599 AAGTCAACATTGCCCGTGGTGGACACCGCATAGCAACGGTTCTCT-TGTATCTGTCCAAT 657
|||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||||||
Sbjct 564 AAGTCAACATTGTCCGTGGTGGACACCGCATAGCAACGATTCT-TATGTATCTATCCAAT 622
Query 658 GTCAC-AAAGGGTGGAGAAACTGTTTTCCCCGATGCACAGG-AATTCTCTCGCCG-CTCG 714
|| || ||| ||||||||||| || ||||| |||||| ||| | | |||||||| |
Sbjct 623 GTGACGAAA-GGTGGAGAAACCGTATTCCCTGATGCAGAGGTACCT-TCTCGCCGAGT-A 679
Query 715 CTTTCTGAGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTGTGAAACCG 774
|| ||||| || ||||| ||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 680 CTCTCTGAAAACAAAGAAGATCTTTCTGATTGTGCTAAGAGAGGAATCGCCGTGAAACC- 738
Query 775 AA-GAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACGCAATCCCAGACCCCTT 833
|| ||||||| ||||| ||||||||||||||||||| | ||||||||| |||||||| ||
Sbjct 739 AAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCAGACGCAATTCCAGACCCATT 798
Query 834 TAGCCTTCACGGAGGTTGTCCAGTGATCGAAGGAGAGAAATGGTCGGCTACTAAGTGGAT 893
||||||||||| || ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 799 GAGCCTTCACGGTGGATGTCCCGTGATCGAAGGAGAGAAATGGTCGGCAACAAAGTGGAT 858
Query 894 CCACGTGGACTCATTCGATAAGATAT-TGACAC-ATGATGGTAACTGTACTGACGTAA-- 949
|||||||||||||||||||||||| | |||||| | | || ||||| || || ||
Sbjct 859 CCACGTGGACTCATTCGATAAGAT-TGTGACACCAAGC-GGAAACTGCAC-GAA-TATGC 914
Query 950 ACGAGAGCTGTGAGAGATGGGCAGTGCTTGGAGAATGTGGAAAGAATCCAGAGTATATGG 1009
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||
Sbjct 915 ACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAGAATCCAGAGTACATGG 974
Query 1010 TTGGAACTCCAGAGATCCCTGGGAATTGCAGACGTAGCTGTAAAGCTTGTTA 1061
|||||||| ||||| | ||||| ||||||| | ||||||||| ||||||||
Sbjct 975 TTGGAACTACAGAGCTTCCTGGCTATTGCAGGCATAGCTGTAAGGCTTGTTA 1026
> Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739
Length=870
Score = 95.3 bits (51), Expect = 9e-19
Identities = 307/422 (73%), Gaps = 51/422 (12%)
Strand=Plus/Plus
Query 499 ACATGGACATTTC-TCCCAAAAGAAAACGGGGAAGACCTT-CAGGTATTGAGA-TATGAG 555
|||||||| |||| |||| | ||||| ||||||| |||| || ||||| | ||||||
Sbjct 322 ACATGGACCTTTCTTCCC-GAGGAAAATGGGGAAG-CCTTACAAATATTG-CACTATGAG 378
Query 556 CACGGTCAGAAATATGATGCTCAC-TTT-GACTACT-TCCACGACAAAGTCAA--C-ATT 609
| ||||| ||||||||| | ||| ||| ||||||| | ||||| ||| || | |
Sbjct 379 AATGGTCAAAAATATGAT-C-CACATTTCGACTACTAT-TACGAC-AAGGAAACTCTAAA 434
Query 610 GCCCGTGGTGGACACCGCATAGCAACGGTTCTCTTGTATC-TGTCCAATGTCACAAAGGG 668
|| | ||||| || || || || || || || |||| | |||||||||||||||||||
Sbjct 435 GCTC--GGTGGTCATCGGATCGCCACCGTACTAATGTA-CTTGTCCAATGTCACAAAGGG 491
Query 669 TGGAGAAACTGT-TTTCCCC-GATGCACAGGAATTCTCTCGCCGCTCGCTTTCTGAGAAT 726
||||||||| || ||||| | || | ||| | | || | ||| || ||
Sbjct 492 TGGAGAAACAGTGTTTCCTATG-TGGA-AGGG-TAAAA-CACCTCA-GCT----GA-AA- 540
Query 727 AAAGACGAT-CTT--TCTGATTGTGC-AAAGAAAGGA-ATCGCTGTGAAACCGAAGAAAG 781
|||||| ||| || || ||||| ||| || || || || |||||||||| |||||
Sbjct 541 ---GACGATACTTGGTCGGAATGTGCGAAACAA-GGCTAT-GCAGTGAAACCGAGGAAAG 595
Query 782 GGAATGCTCTGTTGTTCTTCAACCTCCAAC-AAGACGCAATCC-CAGACCCCTTTAGCCT 839
|| | ||| |||||||||| || || || | || | |||| || |||| || |||| |
Sbjct 596 GGGACGCTTTGTTGTTCTTTAATCTTCATCCAA-ATGCAA-CCACAGATCCAACTAGC-T 652
Query 840 T-CACGGAGGTTGTCCAGTGATCGAAGGAGAGAAATGGTCGGCTACTA-AGTGGATCCAC 897
| || ||| ||||||| ||||| || |||||||||||||| || || | | ||||| |||
Sbjct 653 TACATGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCAGA-TGGATTCAC 711
Query 898 GT 899
||
Sbjct 712 GT 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5