BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06310.1
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477930 jgi|Araly1|477930|fgenesh2_kg.3__631__AT3G06310.1 673 0.0
> Ahg477930 jgi|Araly1|477930|fgenesh2_kg.3__631__AT3G06310.1
Length=617
Score = 673 bits (364), Expect = 0.0
Identities = 525/595 (88%), Gaps = 42/595 (7%)
Strand=Plus/Plus
Query 39 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAA-AAGATTCCCGATCGGATTGGAT 97
||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||
Sbjct 26 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAAGAA-ATTCGCGATCGGATAGGAT 84
Query 98 CATATAAGATTTTAGGGATTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 157
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 CATATAAGA-TTTAGGGGTTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 143
Query 158 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTAACAGCTTCGGCGAAGCATATAG 217
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 144 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTGACAGCTTCGGCGAAGCATATAG 203
Query 218 GAATCAGGTGTATGCCGGAAAACATGGCGTTCCTGAAATGTAAGAAGAATGATCCTAACC 277
|||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 204 GAATGAGATGTATGCCGGAAAACACGGCGTTCCTGAAATGCAAGAAGAATGATCCTAATC 263
Query 278 CAGAGAAATGCCTCGAGAAGGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTGAAGG 337
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 264 CAGAGAAATGCCTCGAGAAAGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTCAAGG 323
Query 338 ATCTTCACCAGAGATGCCCAAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 397
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 324 ATCTTCACCAGAGATGCCCCAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 383
Query 398 CCAACGAGTTTGAGTTGTGTCGGAAAGAGCAAGAAG-CTTTTGAGAAAGTGTGTCCGTTG 456
||||||||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||||
Sbjct 384 CCAACGAGTTTGATTTGTGTCGGAAAGAGCAAGAAGTCTTC-GAGAAAGCGTGCCCGTTG 442
Query 457 AAATGAGAAAGTCAAGTTTTTATCTGTCTCCTAATAAGCAAATGTTCATTTTGACTCTGG 516
|||||||| | | | || |||||||||||||||||| ||| ||| |
Sbjct 443 AAATGAGA----C---T------C---CT---AATAAGCAAATGTTCATTCTGAGTCTTG 483
Query 517 AGCGTTACTCTAATCACTCTTCCATCGCTGCCTGCTTCTTTTCCTTTTCTGGTAATGGAA 576
||| |||||||||||||| ||| | || || ||||| ||||||||||||
Sbjct 484 AGCTTTACTCTAATCACT--------GCT---TA-TT-TT--CCTTTCCTGGTAATGGAA 528
Query 577 GACCTTTAAACCATGTAATATTGTCGTGTTTCCT--TT-GTCCAGTTCTCCCGAG 628
|||| ||||| ||||| |||||||| |||||| | || ||||| ||||||||||
Sbjct 529 GACCATTAAATCATGTCATATTGTCATGTTTCTTAATTTGTCCAATTCTCCCGAG 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27791606493
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5