BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06320.1

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1          560    3e-159
  Ahg941410 jgi|Araly1|941410|scaffold_601954.1                        276    1e-73 


> Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1
Length=375

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 357/381 (94%), Gaps = 12/381 (3%)
 Strand=Plus/Plus

Query  8    GTCATCTTCGTCGGCGAAATCAATTTTCGGACTCCGTCGAATTCGAATTTT-CAGAAATG  66
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||
Sbjct  1    GTCATCTTCGTCGGCGAAACCAATTTTCGGACTCCGTCGAATTCG-ATTTTACAGATATG  59

Query  67   GGAGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACTGGA  126
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GGTGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACTGGA  119

Query  127  TTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAG  186
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  120  TTCTTCTATGTCAAGAGGAAGAGTACTAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAG  179

Query  187  TACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGAT-AAGA  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  180  TACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGATGAA-A  238

Query  246  CAAAAGAAGCTTGCTTTTGCCTGTTATGG-CTATCATAG-ATCAAATAAACGTTTCAATT  303
            ||||| ||||||||||||||||||||||  | |||| || ||||||||| | ||||||||
Sbjct  239  CAAAA-AAGCTTGCTTTTGCCTGTTATGATCAATCA-AGTATCAAATAA-CTTTTCAATT  295

Query  304  TAGAGTTCTATCGAAACTC-TTTGTAGGATTCTCTAAA-ACTTAAGTGCAGATTGATTGT  361
            ||| ||||||||||||||  |||||||||||||| ||| |||||||||||| ||||||||
Sbjct  296  TAGTGTTCTATCGAAACTTGTTTGTAGGATTCTC-AAACACTTAAGTGCAGTTTGATTGT  354

Query  362  ATTGTGATCAATTTCGACACC  382
            | |||||||||| ||||||||
Sbjct  355  ACTGTGATCAATCTCGACACC  375


> Ahg941410 jgi|Araly1|941410|scaffold_601954.1
Length=219

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 169/179 (94%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  62   AAATGGGAGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAA  121
            ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  20   AAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTTTCAGCTGCTGGAA  79

Query  122  CTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCC  181
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  80   CTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGCCTTCTTGAGAAGCTCGAGTTCC  139

Query  182  GTAAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA  240
            ||||||||||||||||||| || || ||||||||||| || |||||||| |||||||||
Sbjct  140  GTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15949036202


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5