BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06330.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477933 jgi|Araly1|477933|fgenesh2_kg.3__634__AT3G06330.1 2222 0.0
Ahg941408 jgi|Araly1|941408|scaffold_601952.1 436 2e-121
> Ahg477933 jgi|Araly1|477933|fgenesh2_kg.3__634__AT3G06330.1
Length=1541
Score = 2222 bits (1203), Expect = 0.0
Identities = 1411/1508 (94%), Gaps = 28/1508 (2%)
Strand=Plus/Plus
Query 11 TTATAGATTTGATTCTTTCTCTCTCAGAATTTTTGTCGA-CCGA----ATTTCATATTCA 65
||||||||||| ||||||||||||||||||||||||||| | || |||||||||| |
Sbjct 1 TTATAGATTTGCTTCTTTCTCTCTCAGAATTTTTGTCGAGCGGATTTGATTTCATATTGA 60
Query 66 TATATAGTTTTATTA-AATAATCTGGTTAGATGAAGATGCAAGATTCGGCAGCTCAAGAA 124
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TATATAGTTTTA-TATTATAATCTGGTTAGATGAAGATGCAAGATTCGGCAGCTCAACAA 119
Query 125 CCGGAAATTGCTATAATCGTGGGAGAttcttcttcttcttc-tcttcattcttcttc-tC 182
||||||||||||||||||||||||||||||||||||||||| || ||| || || ||
Sbjct 120 CCGGAAATTGCTATAATCGTGGGAGATTCTTCTTCTTCTTCTTC-TCA-GGTTGATCATC 177
Query 183 AGGTAACAGAAAAATCTACTGAAGATGTGCCGAGCT-GC--TC--T-------CACTTGG 230
|||||| ||||||||||||||||||||||||||||| | || | |||||||
Sbjct 178 AGGTAAAAGAAAAATCTACTGAAGATGTGCCGAGCTCTCAATCTATCGAAACCCACTTGG 237
Query 231 ATCTTTCAATACAAATACCTTC-CAGATCACTTCCATTCGGTAACGGCCGTAACCCAAAG 289
|||| |||||||||||||| || |||| || |||||||||||||||||||||||||||||
Sbjct 238 ATCTGTCAATACAAATACC-TCTCAGACCAATTCCATTCGGTAACGGCCGTAACCCAAAG 296
Query 290 GGTTCATTGAAGTCCACTCCTTCATTCAAAAGTGGCACTACATCCTCACCAAGAGGAATC 349
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 297 AGTTCATTGAAGTCCACTAGTTCATTCAAAAGTGGCAGTACATCCTCACCAAGAGGGATC 356
Query 350 TTGCGGAATTTAAGCTTGAAAAAGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCC 409
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGCGCAATTTAAGCTTGAAAAAGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCC 416
Query 410 TTACTATCTCCTGGTCTCATGGAAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACT 469
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTACTATCTCCCGGTCTCATGGAAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACT 476
Query 470 TCTCCATATTGGAAAAGATGCTTATCGCTTCCTAGTAGACAAGCTGCAAAACTGTCTCCT 529
|| || |||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 477 TCGCCTTATTGGAAAAGATGCTTATCGCTTCCTAATAGACATGCTGCAAAATTGTCTCCG 536
Query 530 GTGGTTTCTACACAACTTTCAGCTGGGGTGCCTGGTGACCCGCCTAATAAAGATTATTCA 589
|| || ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 537 GTTGTATCTACACAAGTTTCAGCTGGGGTGCCTGGTGAGCCGCCTAATAAAGATTATCCA 596
Query 590 AGGTCCTTGTCCATGCCCGGAAGAAACAAAGTTATTGTGCGATCCATATCTTTTGACAAC 649
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 AGGTCCTTGTCCATGCCCGGAAGAAACAAAGTGATTGTGCGATCCATATCTTTTGACAAC 656
Query 650 CACAAAGCCCGTGTTTCCAGTGAAACAAGTGCAGATCAAGTCTCTTCCGTTCCTCCTGAA 709
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 CACAAAGCCCGTGTTTCCAGTGAAACAAGTGCAGATCAAATCTCTTCCGTTCCTCCTGAA 716
Query 710 GAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGCAGGATCTGTCTGGACGTGTGC 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 GAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGCAGGATCTGTCTGGATGTGTGC 776
Query 770 GAAGAAGGAAATACTTTGAAAATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCAT 829
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GAAGAGGGCAATACTTTGAAAATGGAGTGCAGCTGCAAAGGTGATCTCAGACTTGTTCAT 836
Query 830 GAAGCTTGTGCAATGAAATGGTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGA 889
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAGCGTGTGCCATGAAATGGTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGA 896
Query 890 CAAGTAGTACAGAACTTACCAGTTACATTGGTTCGTGTGCCCACACCTAATCAACAAAAC 949
|||| |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 897 CAAGAAGTAAAGAACTTACCAGTTACATTGGTTCGTGTGCCCACAAGTAATCAACCAAAC 956
Query 950 AACAGACGTGGTAGCAGTCAA-CAGAATATGCCGTCACAAACCGTTAGTGCTTGGCAAGA 1008
|||||||||| | || ||||| || |||||||| ||||||||| | ||||||||||||||
Sbjct 957 AACAGACGTGATCGCGGTCAACCA-AATATGCCTTCACAAACCATAAGTGCTTGGCAAGA 1015
Query 1009 GTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACT 1075
Query 1069 GATTCGTGACTTGAACAAACAAGCTATTTACATCGCAGCACCATTTTCACTTACGTTAGG 1128
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1076 GATTCGTGACTTGAACAAGCAAGCTATTTACATCGCGGCGCCATTTTCACTTACGTTAGG 1135
Query 1129 CCTCTTAGCATCCATTTTTGCCATTGTTCTCGCTATCAGAGAATACATATGGACATACGC 1188
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 CCTCTTAGCATCCATTTTTGCCATTGTCCTCGCTATCAGAGAATACATATGGACATACGC 1195
Query 1189 AGCACTCGAGTTTGCGCTTGTGGGCATGTTGGTTCATATATTCTATGCTACAGTTAGACT 1248
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 AGCACTCGAGTTTGCGCTTGTGGGCATGTTGGTTCATATATTATATGCTACAGTTAGACT 1255
Query 1249 ATCGGCGACCTATTCTATACTCTTTGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCT 1308
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATCGGCGACCTATTCTATACTTTTTGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCT 1315
Query 1309 AAACTCGTTGTACCTTCATTATTTCGCTTGGCGTGTACGCGTTGCACAAAATTCAAGTCC 1368
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1316 AAACTCGTTGTACCTTCATTATTTCGCTTGGCGTGTACGCATTGCAGAAAATTCAAGTCC 1375
Query 1369 TGTATGAAATCTGTTTTCCTTTGTTTCTC-GTTCTTCCTTTGTGTATGTATTATGAAAGA 1427
||||||||||||||||||||| ||||||| |||||||||||| || ||||||||| ||||
Sbjct 1376 TGTATGAAATCTGTTTTCCTTGGTTTCTCTGTTCTTCCTTTGAGTTTGTATTATGGAAGA 1435
Query 1428 AGAAGTTGTTAGTGAAGAGATTCATCAGCTTCAGCAGTTTCCTGTAAAATGTAAATATGT 1487
||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||
Sbjct 1436 AGAAGTTGTTAGTGAAGAGATTCATAAGATCCAGCAGTTACCTGTAAAATGTAAATATGT 1495
Query 1488 ACACTCTT 1495
|||| |||
Sbjct 1496 ACACACTT 1503
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1542 TTTTTCCGGAGCACGATGATGATTTGTGAAAGAGAAGA 1579
||||||| ||||||||||||||||||||||||||||||
Sbjct 1504 TTTTTCCCGAGCACGATGATGATTTGTGAAAGAGAAGA 1541
> Ahg941408 jgi|Araly1|941408|scaffold_601952.1
Length=1279
Score = 436 bits (236), Expect = 2e-121
Identities = 581/746 (78%), Gaps = 30/746 (4%)
Strand=Plus/Plus
Query 614 AACAAAGTTATTGTGCGATCCATATCTTTTGACAACCACAAAGCCCGTGTTTCCAGTGAA 673
|||| ||| ||||| ||| | | ||||||||| || ||||| | |||| | |||
Sbjct 498 AACAGAGTGATTGTACGAGCTGTCTCTTTTGACGACAACAAAAATCACATTTCTAACGAA 557
Query 674 ACAAGT-GCAGATCAAGTCTCTTCC-GTTCCTCCTGAAGAAACTGATGAAGAAATTCCC- 730
||| | || |||||| || | || |||||| | |||||||| || ||||||| ||||
Sbjct 558 GCAAATGGC-GATCAAATCAC-CCCGGTTCCTGCAGAAGAAACAGAAGAAGAAA-TCCCT 614
Query 731 GAAGAAGAAGCCGTGTGCAGGATCTGTCTGGACGTGTGCGAAGAAGGAAATACTTTGAAA 790
||||||||||| || |||||||| ||||| || |||||||||||||| || || |||||
Sbjct 615 GAAGAAGAAGCAGTATGCAGGATTTGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAA 674
Query 791 ATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCATGAAGC-TTGTGCAATGAAATG 849
||||||||||| ||||||||||| |||||||| ||||| | ||| |||||| || || ||
Sbjct 675 ATGGAATGCAGTTGCAAAGGTGACCTCAGACTCGTTCACG-AGCATTGTGCCATTAAGTG 733
Query 850 GTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGACAAGTAGTACAGAACTTACC 909
|||||||||||||||||| ||| ||| || || || ||||||| ||| | |||||||||
Sbjct 734 GTTTAGTACAAAGGGAACGCGAATCTGCGATGTTTGCAGACAAGAAGTCCGGAACTTACC 793
Query 910 AGTTACATTGGTTCGTGTGCCC-ACACCTAATCAACAAAACAACAGACGTGGTA-GCAGT 967
||| | | || | ||||| ||| ||| |||||||| | ||| ||||| || | || |
Sbjct 794 AGTGATACTGCTCCGTGT-CCCAACAATTAATCAACTTACCAATAGACG-GGAACTCACT 851
Query 968 CAACAGAATATGC-C-GTCACAAACCGTTAGTGCT-TGGCAAGAGTTTGTGGTGCTAGTT 1024
|| |||| | | | | | |||||||| |||||| | ||||||||||||| ||||| ||
Sbjct 852 CAGCAGAGT-T-CACAGCCACAAACCATTAGTG-TAGGGCAAGAGTTTGTAGTGCTTGTA 908
Query 1025 CTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACTGATTCGTGACTTGAAC 1084
|| |||||||| |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 909 CTCATCAGCACCGTCTGCTACTTCTTCTTCCTTGAACATTTACTGATTCGTGACTTGAAT 968
Query 1085 AAACAAGCTAT-TTACATCGCAGCACCATTTTCACTT-ACGTTAGGC-CTCTTAGCATCC 1141
||| || || || ||||||| ||||||||| || || || || ||||| || ||
Sbjct 969 TCACAGGCAATCTT-TGTCGCAGCGCCATTTTCA-TTCACCCTA-GCTCTCTTGGCCTCA 1025
Query 1142 ATTTTTGCCATTGTTCTCGCTATCAGAGAATACATATGGACATACGCAGCACTCGAGTTT 1201
| ||| ||| | | ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1026 ACTTTCGCCGTCATCCTCGCGATCAGAGAATACATATGGACATACGCAGCTCTTGAGTTT 1085
Query 1202 GCGCTTGTGGGCAT-G-TTGGTTCATATATTCTATGCTACAGTTAGACTATCGGCGACCT 1259
|| || |||| ||| | ||| ||||| | || ||||||||| || | | ||| | ||
Sbjct 1086 GCACTAGTGG-CATTGCTTG-TTCATCTGTTATATGCTACACTTGGTGTGCCGGTTATCT 1143
Query 1260 ATTCTATACTCTTT-GCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCTAAACTCGTTG 1318
|| | || || ||| || |||||||| ||||| ||||| || ||||| |||||| ||||
Sbjct 1144 ATGCAATGCT-TTTCGCGGGGATTCTGGGTTTCGGGATGGCAATGTGCTTAAACTTGTTG 1202
Query 1319 TACCTTCATTATTTCGCTTGGCGTGT 1344
| | || ||||| | || ||| |||
Sbjct 1203 TGCATTTGTTATTCCTCTCGGCCTGT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5