BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06360.1 Length=545 Score E Sequences producing significant alignments: (Bits) Value Ahg477939 jgi|Araly1|477939|fgenesh2_kg.3__640__AT3G06360.1 684 0.0 > Ahg477939 jgi|Araly1|477939|fgenesh2_kg.3__640__AT3G06360.1 Length=451 Score = 684 bits (370), Expect = 0.0 Identities = 432/460 (94%), Gaps = 12/460 (3%) Strand=Plus/Plus Query 40 CTTTGATTTGTTCATCATTACAGTAACCAAAAAAGATGGCTTCATCTATATTGCTAACAC 99 |||||||||||||||||||||||||||| ||||||||||| | || ||||||||||| Sbjct 1 CTTTGATTTGTTCATCATTACAGTAACC-AAAAAGATGGC-T--TC---ATTGCTAACAC 53 Query 100 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAATACAATCC 159 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 54 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAACACAATCC 113 Query 160 CATCTTCGCAAACAATCTCTCCCTCTGAAGAAAAGATCTCACCGGAGATCGCTCCTCTCC 219 ||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct 114 CATCTTCCCCAACAATCTCTCCCTTTGAAGAACAGATCTCGCCGGAGATCGCTCCTCTCC 173 Query 220 TCCCTTCACCCGCCGTCTCCTCCA---CTCAAACCATCCCTTCTTCTTCAACACTTCCTG 276 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 174 TCCCTTCACCCGCCGTCTCCTCCAGTACTCAAACCATCCCTTCTTCTTCAACACTTCCCG 233 Query 277 AACCAGAAAACGACGACGTTTCCGCAGATCCTGATCCCGCCTTCGCTCCATCGGCTTCTC 336 ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 234 AACCAGAAAACGACGACGTTTTTGCAGATCCTGATCCCGCCTTCGCTCCCTCCGCTTCTC 293 Query 337 CTCCGGCTTCATCTCTTGCTTCTCTGTCTTCTCAAGCTCCCGGAGTTTTCATCTACTTTG 396 |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 294 CTCCGGCTTCATCTCTTGCTACTCTGTCTTCTCAAGCCCCCGGAGTTTTCGTCTACTTTG 353 Query 397 TCTTCGCCGCCGTCTATTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 456 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 TCTTCGCCGCCCTCTCTTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 413 Query 457 TTCATATATTTTAGACCACGTACGTCATTATTTTCATGAG 496 ||||||| ||| |||||||||||||||||||||||||||| Sbjct 414 TTCATAT-TTT-AGACCACGTACGTCATTATTTTCATGAG 451 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19879061869 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5