BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06360.1
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477939 jgi|Araly1|477939|fgenesh2_kg.3__640__AT3G06360.1 684 0.0
> Ahg477939 jgi|Araly1|477939|fgenesh2_kg.3__640__AT3G06360.1
Length=451
Score = 684 bits (370), Expect = 0.0
Identities = 432/460 (94%), Gaps = 12/460 (3%)
Strand=Plus/Plus
Query 40 CTTTGATTTGTTCATCATTACAGTAACCAAAAAAGATGGCTTCATCTATATTGCTAACAC 99
|||||||||||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 1 CTTTGATTTGTTCATCATTACAGTAACC-AAAAAGATGGC-T--TC---ATTGCTAACAC 53
Query 100 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAATACAATCC 159
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 54 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAACACAATCC 113
Query 160 CATCTTCGCAAACAATCTCTCCCTCTGAAGAAAAGATCTCACCGGAGATCGCTCCTCTCC 219
||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 114 CATCTTCCCCAACAATCTCTCCCTTTGAAGAACAGATCTCGCCGGAGATCGCTCCTCTCC 173
Query 220 TCCCTTCACCCGCCGTCTCCTCCA---CTCAAACCATCCCTTCTTCTTCAACACTTCCTG 276
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 174 TCCCTTCACCCGCCGTCTCCTCCAGTACTCAAACCATCCCTTCTTCTTCAACACTTCCCG 233
Query 277 AACCAGAAAACGACGACGTTTCCGCAGATCCTGATCCCGCCTTCGCTCCATCGGCTTCTC 336
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 234 AACCAGAAAACGACGACGTTTTTGCAGATCCTGATCCCGCCTTCGCTCCCTCCGCTTCTC 293
Query 337 CTCCGGCTTCATCTCTTGCTTCTCTGTCTTCTCAAGCTCCCGGAGTTTTCATCTACTTTG 396
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 294 CTCCGGCTTCATCTCTTGCTACTCTGTCTTCTCAAGCCCCCGGAGTTTTCGTCTACTTTG 353
Query 397 TCTTCGCCGCCGTCTATTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 456
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCTTCGCCGCCCTCTCTTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 413
Query 457 TTCATATATTTTAGACCACGTACGTCATTATTTTCATGAG 496
||||||| ||| ||||||||||||||||||||||||||||
Sbjct 414 TTCATAT-TTT-AGACCACGTACGTCATTATTTTCATGAG 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19879061869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5