BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06370.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928265 jgi|Araly1|928265|scaffold_300722.1 2316 0.0
> Ahg928265 jgi|Araly1|928265|scaffold_300722.1
Length=1706
Score = 2316 bits (1254), Expect = 0.0
Identities = 1439/1528 (94%), Gaps = 14/1528 (1%)
Strand=Plus/Plus
Query 172 TCTTAAAGCTGAGATTTGGAAATGGTGATCGGATTAAGCACAATGCTGGAAAAAACAGAG 231
||||| ||| |||||| || |||||||||||||||| |||||||||||| ||| |||||
Sbjct 1 TCTTAGAGCAGAGATTCGGCGATGGTGATCGGATTAACCACAATGCTGGAGAAATCAGAG 60
Query 232 GCTCTTTTCGCTTCTGATCATGCATCGGTCGTCTCCATGAATTTGTTCGTAGCTTTGCTT 291
|||||||||||||| |||||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 61 GCTCTTTTCGCTTCAGATCATGCATCGGTCGTCTCCATGAACTTATTCGTTGCTCTGCTT 120
Query 292 TGTGCTTGCATCGTGCTTGGTCACTTGCTTGAGGAGACTCGGTGGATGAACGAGTCAATC 351
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TGTGCTTGCATAGTGCTTGGTCACTTGCTCGAGGAGACTCGGTGGATGAACGAGTCAATC 180
Query 352 ACTGCTCTTATCATTGGTTCGTGTACTGGGATTGTGATCTTGCTTATAAGTGGAGGCAAA 411
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTGCTCTTATCATCGGTTCATGTACTGGGATTGTGATCTTGCTTATAAGTGGAGGCAAG 240
Query 412 AGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATT 471
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 AGCTCAAGGATTCTTGTGTTCAGTGAAGATCTCTTCTTCATTTATCTTCTTCCACCGATT 300
Query 472 ATATTCAACGCAGGGTTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATT 531
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATATTCAACGCAGGATTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATT 360
Query 532 ATGTTATTTGGTGCTATTGGAACTCTCATTTCATTTGTTATCATCTCATTTGGTGCTAAA 591
||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 ATGTTATTTGGTGCTGTTGGTACTCTCATTTCATTTGTTATCATATCATTAGGTGCTAAA 420
Query 592 CATCTTTTCGAGAAAATGAATATCGGTGATCTTACCATTGCGGACTATCTAGCCATTGGA 651
||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 421 CATTTTTTCAAGAAAATGAATATCGGTGATCTTACCATTTCGGATTATCTAGCCATTGGA 480
Query 652 GCAATATTCTCTGCTACAGACTCTGTTTGCACCTTGCAAGTGCTTAATCAAGACGAGACA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAATATTCTCTGCTACAGACTCTGTTTGCACCTTGCAAGTGCTTAATCAAGACGAGACA 540
Query 712 CCTCTCTTGTACAGTCTTGTCTTTGGAGAAGGTGTAGTGAACGATGCCACATCGGTCGTG 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CCTCTCTTGTACAGTCTTGTCTTTGGAGAAGGTGTAGTGAACGATGCCACATCGGTTGTT 600
Query 772 CTCTTCAATGCAATACAGAGATTCGACCTCACAAATATCAATTCAGCCATAGCTTTGGAG 831
|||||||| || ||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 601 CTCTTCAACGCGATACAGAGATTTGACCTCACACACATCAATTCAGCCATAGCTTTGGAG 660
Query 832 TTTGCTGGAAACtttttttACCTCTTTATCTTAAGCACAGCACTTGGTGTTGCAGCTGGA 891
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTTGCTGGAAACTTCTTTTATCTCTTCATCTTAAGCACAGCACTTGGTGTTGCAGCTGGA 720
Query 892 TTGCTCAGTGCTTTTGTTATCAAGAAGCTCTATATAGGAAGGCACTCTACTGATCGTGAA 951
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 TTGCTCAGTGCTTTTGTTATCAAGAAGCTCTATATCGGAAGGCACTCTACTGATCGTGAA 780
Query 952 GTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAGCTATTCCACTTG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAGCTGTTCCACTTG 840
Query 1012 AGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAAT 1071
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 841 AGCTCTATCTTGACTGTGTTCTTCTGTGGTATTGTTATGTCTCACTACACATGGCACAAT 900
Query 1072 GTTACAGATAAATCCAAGGTCACTACAAAACATACTTTTGCTGCAATGTCATTTCTAGCT 1131
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 GTTACAGATAAATCAAAGGTCACTACAAAACATACTTTTGCTGCATTGTCATTTCTAGCT 960
Query 1132 GAGATTTTTATCTTCCTTTACGTTGGAATGGACGCTCTCGATATCGAGAAATGGGACGTT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGATTTTTATCTTCCTTTACGTTGGAATGGACGCTCTCGATATCGAGAAATGGGACGTT 1020
Query 1192 GTACGCAACAGTCCTGGTCAGTCGATTGGAGTTAGTTCAATACTTCTTGGGCTTATTCTT 1251
||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1021 GTACGCAGCAGTCCTGGTCAGTCGATTGGTGTGAGTTCAATACTTCTCGGGCTTATTCTT 1080
Query 1252 CTGGGTCGCGCCGCGTTCGTGTTTCCACTTTCCTTCTTGTCCAATTTAACAAAGTCTTCA 1311
||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1081 GTGGGTCGCGCCGCCTTCGTGTTCCCACTTTCCTTCCTGTCCAATTTAACAAAGTCTTCA 1140
Query 1312 CCGGATGAGAAAATAGACTT--AAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGC 1369
| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 CTGGATGAGAAAATAGA-TTGGAAA-AAACAAGTAACCATTTGGTGGGCTGGTCTGATGC 1198
Query 1370 GTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGTTCACAACTTCAGGACACACCAAGG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGTTCACAACTTCAGGACACACCAAGG 1258
Query 1430 TTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGG 1489
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1259 TTCTTGGAAACGCTATCATGATCACCAGCACCATCACTGTTGTTCTTTTCAGCACTGTGG 1318
Query 1490 TGTTTGGATTGCTAACCAAACCGTTAGTCAAACATTTGCAGCCTTCATCAAAAC-AGTCC 1548
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||
Sbjct 1319 TGTTTGGATTGCTAACCAAACCGTTAGTAAAACACTTGCAGCCTTCATCAAAACGA-TCT 1377
Query 1549 TCCACGACCGCGCTGCAGATCACA-CTAAGATCTTCTTTCCACGATCCGATCCTC-CA-- 1604
||||| ||||||||||| |||||| | | |||||||||||||||||||| ||||| ||
Sbjct 1378 TCCACCACCGCGCTGCAAATCACAAC-AGGATCTTCTTTCCACGATCCGCTCCTCACAAA 1436
Query 1605 ---TGAGCCGTTGCTCAGTACCCAAGGCCAGTCAGAATACGACCCTGAACAACATGTTAG 1661
|||||||||||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct 1437 CAATGAGCCGTTGCTCAGTACCCAAGGCCCGTCAGAATACAACATTGAACAACCGGTTAG 1496
Query 1662 CTTCAGAATGTTCTGGAAATCTCCTTCC 1689
||| |||||||||||||| ||||| |||
Sbjct 1497 CTTTAGAATGTTCTGGAACTCTCCGTCC 1524
Score = 143 bits (77), Expect = 6e-33
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1686 TTCCAGGTTCACCCATTGAGAATAGTGTTCCGCAATGGAGTGAAGAAGTAGAAAACAAGG 1745
||||||||||||||||||| | |||||||| ||| |||||||||||||| ||||||||||
Sbjct 1607 TTCCAGGTTCACCCATTGATACTAGTGTTCGGCAGTGGAGTGAAGAAGTTGAAAACAAGG 1666
Query 1746 AACAAAACGGCGAACCTTGATGACCATAATGACAT 1780
||||||||||||||||||||||||||| |||||||
Sbjct 1667 AACAAAACGGCGAACCTTGATGACCATTATGACAT 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5