BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06380.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477941 jgi|Araly1|477941|fgenesh2_kg.3__642__AT3G06380.1 2050 0.0
> Ahg477941 jgi|Araly1|477941|fgenesh2_kg.3__642__AT3G06380.1
Length=1502
Score = 2050 bits (1110), Expect = 0.0
Identities = 1410/1545 (91%), Gaps = 60/1545 (4%)
Strand=Plus/Plus
Query 52 AAGCGGTAAAAGCGTTTAAGAAGATGAAGAAGAAAAAGGAAACGCCTCCAAATCACCATT 111
||||||||||||||||| || | | ||||||||||||| ||||||||| |||||||||||
Sbjct 1 AAGCGGTAAAAGCGTTT-AG-A-A-GAAGAAGAAAAAGAAAACGCCTCAAAATCACCATT 56
Query 112 ATTGTCCGAATCTTCTTCGCGTCTCTCACCAACACCACTTCTCCTACCTTCTTCTTCACA 171
|||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 57 ATTGTCCGAATCTTCTTCGCGTCTCTCAACAACACCACTTCTCCTA------TCTT---- 106
Query 172 CCAAATGATTCTCTCGTATAATATTCATCAAACCCAGATCATGTTTTCATCATCAATCAT 231
| |||| || |||| |||||||||||||||||||||||||||||| |
Sbjct 107 -C------TTCT-TC-------ATTCCTCAAACCCAGATCATGTTTTCATCATCAATAAA 151
Query 232 CTCTTAAACTCCTCTATAGATCTCACCGCATGACGTTCCGAAGTTT-ACTCCAGGAAATG 290
||||||||| ||| | ||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 152 CTCTTAAAC-CCT-T-TAGATCTCACCGCATGACGATCCGAAGTTTGA-TCCAGGAAATG 207
Query 291 CGGTCTAGGCCACACCGTGTAGTTCACGCCGCCGCCTCAACCGCTAATAGTTCAGACCCT 350
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 208 CGGTCTAGGCCACACCGTGTGGTTCACGACGCCGCCTCAACCGCTAATAGTTCAGACCCT 267
Query 351 TTCAGCTGGTCGGAGCTCCCGGAGGAGCTGCTTAGAGAAATCCTGATTAGGGTTGAGACT 410
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 268 TTCAGCTGGTCGGAGCTCCCGGAGGAGCTGCTGAGAGAGATTCTGATTAGGGTTGAGACG 327
Query 411 GTTGACGGCGGCGATTGGCCGTCGCGGCGAAACGTGGTGGCTTGTGCCGGCGTTTGTCGT 470
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 328 GTTGACGGCGGTGATTGGCCCTCGCGGCGAAACGTGGTGGCTTGTGCCGGCGTTTGCCGT 387
Query 471 AGCTGGAGGATTCTCACCAAGGAGATTGTAGCTGTTCCTGAATTCTCCTCTAAATTGACT 530
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 388 AGCTGGCGGATTCTCACGAAGGAGATTGTAGCTGTTCCTCAATTCTCCTCTAAATTGACT 447
Query 531 TTCCCTA-TCTCCCTCAAGCAGTCTGGTCCAAGAGATTCTCTAGTTCAATGCTTTATAAA 589
||||| | | |||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 448 TTCCCCAGT-TCCCTCAAGCAGCCTGGTCCAAGGGATTCTCTAGTTCAATGCTTTATAAA 506
Query 590 ACGTAATCGAAATACTCAATCGTATCATCTCTATCTCGGATTAACTACCTCTTTGACGGA 649
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 507 ACGTAATCGAAATACTCAATCGTATCATCTCTATCTCGGGTTAACTACCTCTTTGACGGA 566
Query 650 TAACGGGAAGTTTCTTCTTGCTGCTTCTAAGCTGAAGCGCGCAACTTGCACTGATTACAT 709
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 567 TAACGGGAAGTTTCTTCTTGCTGCTTCTAAGCTGAAGCGCGCAACTTGTACTGATTACAT 626
Query 710 CATCTCTTTGCGTTCAGACGATATCTCAAAGAGAAGCAACGCGTATCTTGGGAGAATGAG 769
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 627 CATCTCTTTGCGTTCAGACGATATCTCAAAGAGAAGCAACGCGTATCTGGGGAGAATGAG 686
Query 770 ATCGAACTTCCTTGGAACAAAATTCACGGTCTTTGATGGT-A---G-T----CAGACCGG 820
||||||||||||||||||||||||||||||||| |||||| | | | || |||||
Sbjct 687 ATCGAACTTCCTTGGAACAAAATTCACGGTCTTCGATGGTAATCTGATGCCACATACCGG 746
Query 821 AGCAGCGAAGATGCAGAAGAGCCGCTCTTCTAATTTCATCAAAGTTTCACCTAGAGTTCC 880
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 747 AGCAGCGAAAATGCAAAAGAGCCGCTCTTCTAATTTCATCAAAGTTTCAACTAAAGTTCC 806
Query 881 TCAGGGAAGTTACCCCATCGCTCACATTTCATACGAGTTAAACGTCTTAGGCTCTCGGGG 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 807 TCAGGGAAGTTACCCCATCGCTCACATTTCATACGAGTTAAACGTCTTAGGCTCTAGGGG 866
Query 941 ACCGAGAAGAATGCGTTGCATC-ATGGATACAATACCTATGAGCATCGTGGAGT-CGCGA 998
|||||| |||||| |||||| | ||||| ||||||||||||||| | ||||||| | |||
Sbjct 867 ACCGAGGAGAATGTGTTGCA-CTATGGACACAATACCTATGAGCGTAGTGGAGTAC-CGA 924
Query 999 GGAGTAGTAGCTTCAACATCCATA-AGCTCTTTTTCCAGTCGGTCATCACCAG-TCTTTA 1056
| | ||||||||||||||||||| | ||| ||||||| || ||||||||| | ||||||
Sbjct 925 -G-G-AGTAGCTTCAACATCCATACA-CTCCTTTTCCACTCAGTCATCACC-GTTCTTTA 979
Query 1057 GGTCTCACTCAAAACC-ATTGCGCAGTAATAGTGCATCATGTAGCGACTCAGGCAACAAC 1115
|||||||||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 980 GGTCTCACTCAAAACCGA-TGCGCAGCAATAGTGCATCTTGTAGCGACTCAGGAAACAAC 1038
Query 1116 CTGGGAGATCCACCATTGGTGCTGAGCAACAAAG-CTCCACGGTGGCATGAGCAGTTACG 1174
||| |||| ||||||||||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct 1039 CTGAGAGACCCACCATTGGTGCTGAGCAAC-AAGACTCCACGATGGCATGAGCAGCTACG 1097
Query 1175 TTGCTGGTGCTTAAATTTCCATGGTCGAGTCACAGTGGCTTCGGTTAAGAACTTTCAGCT 1234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ATGCTGGTGCTTAAATTTCCATGGTCGAGTCACAGTGGCTTCGGTTAAGAACTTTCAGCT 1157
Query 1235 TGTGGCAGTTAGTGACTGTGAAGCAGGGCAGACATCTGAGAGGATCATACTCCAGTTTGG 1294
||||||||| || ||||||||| |||||| | ||||||||||||||||||| ||||||||
Sbjct 1158 TGTGGCAGTCAGCGACTGTGAAACAGGGCTGCCATCTGAGAGGATCATACTTCAGTTTGG 1217
Query 1295 GAAAGTTGGGAAGGACATGTTTACCATGGATTATGGATATCCGATTTCTGCGTTTCAAGC 1354
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1218 TAAAGTTGGGAAGGACATGTTCACCATGGATTATGGGTATCCGATTTCTGCATTTCAAGC 1277
Query 1355 GTTTGCTATCTGCCTGAGCAGTTTTGAAACCAGAATTGCCTGTGAATAATGAAGAGACTA 1414
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1278 GTTTGCAATCTGCCTGAGCAGTTTTGAAACCAGAATTGCCTGTGAATGATGAAGAGACTA 1337
Query 1415 ACCTTAAATCACCTCCGTGTGCTCGTTGTTGTGGTCTGTAGATGGTGTAGTACTTGTCCA 1474
|||||||||||||||| ||| || ||||| || ||||||||||||| | || |||||||
Sbjct 1338 ACCTTAAATCACCTCCATGTACTTGTTGTGGTCATCTGTAGATGGTGAAATATTTGTCCA 1397
Query 1475 AAATCTCAGGAACGTTAATAGCTTTCTCTGGATTCTTTCTGACAATTCAAATCTATCTGT 1534
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1398 AAATCTCAGGAACGTTAATAGCTTTCTCTGGATTCTTCCTGACAATTTAAATCTATATGT 1457
Query 1535 TGTATTTATTTGTCTTTCATGCAAAGAAGCGTACCAGAAATAGGC 1579
||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 1458 TGTATTTTTTTGTCTTTCATGCCAAGAAGCTTACCAGAAATAGGC 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5