BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06390.1
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477942 jgi|Araly1|477942|fgenesh2_kg.3__643__AT3G06390.1 1066 0.0
Ahg952616 jgi|Araly1|952616|scaffold_96200002.1 355 3e-97
Ahg952615 jgi|Araly1|952615|scaffold_96200001.1 303 1e-81
> Ahg477942 jgi|Araly1|477942|fgenesh2_kg.3__643__AT3G06390.1
Length=860
Score = 1066 bits (577), Expect = 0.0
Identities = 773/860 (90%), Gaps = 44/860 (5%)
Strand=Plus/Plus
Query 1 GCGGCCAACTTCATAACTCACAGTCCAAACTTAACCACAACCTAATCCACAAAAGAGTTA 60
|||||||| |||||||||||||||||||| || |||| | || ||||||||||||||
Sbjct 1 GCGGCCAAATTCATAACTCACAGTCCAAA--GAA--ACAA-C-AACCCACAAAAGAGTTA 54
Query 61 TAGAATCATCTGATGGCGTCTACTGAGAACCCTGACCCTGAAACTGGCAAATCTGAACCG 120
|| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 55 TATAATCATCTGATGGCATCTACCGAGAACCCTGACCCAGAAACTGGCAAATCTGAACCG 114
Query 121 ATTCCCGCGTCGGCTACACCACCACCCT-CATCAGCCGCCAGTTTCCTAGATTGTCGTAA 179
|||||||| ||||||||| ||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 115 ATTCCCGCATCGGCTACAACACCA-CCTCCCTCAGCCGCTAGTTTCCTAGATTGTCGTAA 173
Query 180 AATAGACATTATAACAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTTATAGTAAT 239
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AATAGACGTTATAATAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTTATAGTAAT 233
Query 240 GGTGACTAGCGACCAGACAGAGATGACTCAGCTCCCTGGAGTTTCGTCTCCGGCTCCTGT 299
|||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 234 GGTGACCAGCGACCAGACCGAGAAGACTCAGCTCCCTGGAGTTTCTTCTCCGGCTCCTGT 293
Query 300 CTCCGCCGAGTTCAATGACTCGCCCGCTTTCATATACTTCGTGGTTGCTCTCGTGGTAG- 358
||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
Sbjct 294 CTCCGCCGAGTTCAATGACTCTCCCGCTTTCATATTCTTCGTGGTTGCTCTTGTGGT-GA 352
Query 359 CTAGTTTCTATGCGCTCATATCAACACTTGTCTCCATCTCTCTACTCTTGAAACCTGAGT 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTAGTTTCTATGCGCTCATGTCAACACTTGTCTCCATCTCTCTACTCTTGAAACCTGAGT 412
Query 419 TCACTGCACAGTTCTCCATTTACCTAGCCTCGTTAGACATGGTGATGCTGGGGATTTTGG 478
| ||||||| | ||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 413 TTACTGCACGGGTCTCCGTTTACCTAGCGTCCTTAGACATGGTGATGCTGGGGATTTTGG 472
Query 479 CGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACATAGCGTTGAAAGGAAACGAAGAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 CGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACATAGCGTTGAAAGGAAACAAAGAAG 532
Query 539 TTGGGTGGAACAAGATCTGTAATGTCTACGACAAGTTTTGTCGTTACATCGCAACTTCGC 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTGGGTGGAACAAGATTTGTAATGTCTACGACAAGTTTTGTCGTTACATCGCAACTTCGC 592
Query 599 TTGCCTTATCTCTATTTGCTTCACTTCTTCTTCTAGTTTTATCCATCTGGTCAGCACTCT 658
||||||||||||| |||||| ||||||||||||||||||||||||| || ||||| ||||
Sbjct 593 TTGCCTTATCTCTCTTTGCTACACTTCTTCTTCTAGTTTTATCCATTTGCTCAGCTCTCT 652
Query 659 CCAAGAGAAC---ATGAACAAAA-----GCTTATAAATCCATCCTTTCCCTGTACTGTGT 710
|||||||||| |||||||||| ||| |||||||||| | || |||||| ||||
Sbjct 653 CCAAGAGAACTCCATGAACAAAACAAAAGCTC-TAAATCCATCATCTCTCTGTACCGTGT 711
Query 711 ATTTGTTCACACGTGT-T-T--GTCT--GTGTCT--T--GATTTGTTTTGT---TTATGT 757
|||||||||||||||| | | |||| |||||| | |||||||||||| || |||
Sbjct 712 ATTTGTTCACACGTGTGTGTATGTCTTTGTGTCTGATTTGATTTGTTTTGTAACTTTTGT 771
Query 758 TATATTA-ATGTAA---AAGCATGCGTTTCTATAT-ACAGTACG-A-AGTTGCATTCGTG 810
||| ||| || ||| ||||||||||||||| || || | ||| | ||||| |||||||
Sbjct 772 TATGTTATATTTAATGTAAGCATGCGTTTCTA-ATTAC-G-ACGTATAGTTGAATTCGTG 828
Query 811 TATCTCTTGTCGCGTAATAT 830
||||||||| | ||||||||
Sbjct 829 TATCTCTTG-C-CGTAATAT 846
> Ahg952616 jgi|Araly1|952616|scaffold_96200002.1
Length=256
Score = 355 bits (192), Expect = 3e-97
Identities = 216/227 (95%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 455 ACATGGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 514
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 ACA-GGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 75
Query 515 TAGCGTTGAAAGGAAACGAAGAAGTTGGGTGGAACAAGATCTGTAATGTCTACGACAAGT 574
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 76 TAGCGTTGAAAGGAAACAAAGAAGTTGGGTGGAACAAGATTTGTAATGTCTACGACAAGT 135
Query 575 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTATTTGCTTCACTTCTTCTTCTAG 634
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 136 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTCTTTGCTACACTTCTTCTTCTAG 195
Query 635 TTTTATCCATCTGGTCAGCACTCTCCAAGAGAAC---ATGAACAAAA 678
|||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 196 TTTTATCCATTTGCTCAGCTCTCTCCAAGAGAACTCCATGAACAAAA 242
> Ahg952615 jgi|Araly1|952615|scaffold_96200001.1
Length=319
Score = 303 bits (164), Expect = 1e-81
Identities = 191/204 (94%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 53 AAGAGTTATAGAATCATCTGATGGCGTCTACTGAGAACCCTGACCCTGAAACTGGCAAAT 112
|||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 AAGAGTTATATAATCATCCGATGGCATCTACTGAGAACCCTGACCCAGAAACTGGCAAAT 60
Query 113 CTGAACCGATTCCCGCGTCGGCTACACCACCACCCT-CATCAGCCGCCAGTTTCCTAGAT 171
|||||||||||||||| ||||||||| ||||| ||| | |||||||| ||||||||||||
Sbjct 61 CTGAACCGATTCCCGCATCGGCTACAACACCA-CCTCCCTCAGCCGCTAGTTTCCTAGAT 119
Query 172 TGTCGTAAAATAGACATTATAACAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT 231
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTCGTAAAATAGACGTTATAATAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT 179
Query 232 ATAGTAATGGTGACTAGCGACCAG 255
|||||||||||||| |||||||||
Sbjct 180 ATAGTAATGGTGACCAGCGACCAG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31565775276
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5