BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06410.1
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477944 jgi|Araly1|477944|fgenesh2_kg.3__645__AT3G06410.1 2608 0.0
> Ahg477944 jgi|Araly1|477944|fgenesh2_kg.3__645__AT3G06410.1
Length=1851
Score = 2608 bits (1412), Expect = 0.0
Identities = 1755/1905 (92%), Gaps = 86/1905 (5%)
Strand=Plus/Plus
Query 8 TTTTATTTTAGTTCAAAAAAGTTTTCAGCTTTGAAGGCagagagagagagagagagaTCA 67
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTT-TTTTAGTTCAAAAAAG-TTTCAGCTTTGAAGGCAGAGAGAGAGAGAGAGAGATCA 59
Query 68 AGCGACTAGTGAGAGTGGTGTTGAAGCGAAACTACGATCTTCTTTTTTCCTTTTCAGATT 127
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 60 AGCGAC---TGAGAGTGGTGTTGAAGCGAAACTACGATCTTC-TTTTT-CTTTTCTTCTT 114
Query 128 T-TCACA--ATCACAACACTCTTCTTTGATCGGAGCTCTAACATTCCGACAAAAGCTCaa 184
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCTCAGATTTTCACAACACTCTTCTTTGATCGGAGCTCTAACATTCCGACAAAAGCT--- 171
Query 185 aaaaaaaaaaaaaaaaGACTTCTTTCTTTTGCTCTTTTGAGGGATTTGTCTCCCTCTGTA 244
|||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 172 ------------AAAAGACTTC-CTCTTTAGCTGGTTTGAGGGATTTGTCTCCCTCTGTA 218
Query 245 GAGATTAGGGTCTATCAATGGAGCGGTACGGTCGCCCCGGTGAAGAAGGGTCGCGATCGG 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 219 GAGATTAGGGTCTATCAATGGAGCGGTACGGTCGCGCCGGTGAAGAAGGGTCGCGATCGG 278
Query 305 ATCCATCTCTTGAATGGACCTCTCATGGTGGTGAAACCGCTGTCGAAGCTCCGATGTGGC 364
|||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 279 ATCCATCTCTTGAATGGACCTCTCATGGAGGTGAAACCGGACTCGAAGCTTCGATGTGGC 338
Query 365 GGTTAGGGTTGAGCGGCGGCGGCGGAGGTGGAGGAGGTGGAGAATCGTACCCGGAGAGAC 424
|||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct 339 GGTTAGGGTTGA---GCGGCGGC---------GGA---GGAGAATCGTACCCGGAGCGAC 383
Query 425 CTGACGAGCCTGATTGTATTTATTACTTGAGAACCGGCGTTTGCGGGTACGGGTCAAGAT 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CCGACGAGCCTGATTGTATTTATTACTTGAGAACCGGCGTTTGCGGGTACGGGTCAAGAT 443
Query 485 GTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTG 503
Query 545 GAGCTTTACCGGAGAGGATGGGACATCCGGTTTGTCAGCATTTTATGCGAACTGGTACGT 604
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 504 GAGCTTTACCGGAGAGGATGGGACATCCGGTTTGTCAGCATTTTATGCGGACGGGAACGT 563
Query 605 GTAAATTCGGTGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCG 664
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GTAAATTTGGCGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCG 623
Query 665 TTGCGCCTGTCTCGCTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCT 724
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TTGCGCCTGTCTCGCTTAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCT 683
Query 725 CTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTTGACTTGTAGATTCAACCATCCCG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTTGACTTGTAGATTCAACCATCCCG 743
Query 785 TGCCACTCGCTGTACAGGGTCCACCTcagcagccgcaacagcagcagccacagccacagc 844
||||||||||||||||||||||||||||||| | || | | ||||| |||| | ||
Sbjct 744 TGCCACTCGCTGTACAGGGTCCACCTCAGCATCAGC-A-A-CAGCA---ACAG-C-CA-- 793
Query 845 cgcagctacagACTATTTATCCGACACTTCAATCTCAATCTATTCCTTCGTCTCAACAAT 904
||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 794 --CAGCTACAGACTATTTATCCGACACTTCAGTCTCAATCCGTTCCTTCCTCTCAACAAT 851
Query 905 ATGGGTTAGTTTTGACTAGGCCTTCTTTTTTAACTGGTTCATATCTTCAAAGCCCTTACG 964
|||||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||
Sbjct 852 ATGGGTTAGTTTTGACAAGGCCATCTCTTTTACCTGGTTCATATCTTCCAAGCCCTTACG 911
Query 965 GTCCTCCAATGGTTCTGCCTCCTGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGG 1024
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 912 GTCCTCCAATGGTTCTGCCTCCGGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGG 971
Query 1025 CTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACCGTCTATTGGATCAAGCTCTATTT 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 972 CTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACCGTCTATTGGATCAAGCTCTGTTT 1031
Query 1085 ATGGACTCACGCCGTTATCTCCTTCAGCGACTGCATATACAGGAACATATCAATCTGTGC 1144
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1032 ATGGAATCACGCCGTTATCTCCTTCAGTGACTGCATATACAGGAACATATCAATCAG-GC 1090
Query 1145 CT-TCTTCAAATTCCACCTCAAAAGAGTTTCCTCAGCGACCTGATCAACCCGAGTGTCAA 1203
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CCGTCTTCAAAT---ACCTCAAAAGAGTTTCCTCAGCGACCTGATCAACCCGAGTGTCAA 1147
Query 1204 TACTTCATGAGAACTGGTGACTGTAAATTCGGATCTTCGTGTCGATACCATCATCCTGTA 1263
|||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1148 TACTTCATGAGAACCGGTGACTGTAAATTCGGATCCTCTTGCCGATACCATCATCCTGTA 1207
Query 1264 GATGCAGTTCCACCTAAGACTGGCATTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCC 1323
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1208 GATGCAGTTCCACCTAAGACTGGCCTTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCC 1267
Query 1324 GGCGTAGCGCAATGCACTCACTTTGCTCAACACGGAATCTGCAAGTTTGGACCGGCGTGT 1383
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1268 GGAGTAGCGCAATGCACTCACTTTTCTCAACACGGAATCTGCAAGTTTGGACCAGCGTGT 1327
Query 1384 AAGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACT 1443
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 AGGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACC 1387
Query 1444 GATATGCCCGTGGCGCCATACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCA 1503
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GATATGCCCGTGGCTCCATACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCA 1447
Query 1504 GTAAGCTCTAGCAATGAACCCACCAAAGAGGCTGTGACT-C--CTGCAGTTTC---TTCT 1557
|||||||| |||||||||||||||| ||||||||||||| | |||||||||| ||||
Sbjct 1448 GTAAGCTCAAGCAATGAACCCACCACAGAGGCTGTGACTGCTGCTGCAGTTTCCACTTCT 1507
Query 1558 ATGGTCAGTGGCTTGAGCCGTCCTGAGCCAGCTGAGACGAGTGGTGACTCAGCCAGCGTC 1617
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1508 ATGGTCAGTGGCTTGAGCCGTCCAGAGCCAGCTGAGACGAGTGGTGACTCGGCCAGCGTC 1567
Query 1618 AGTGGCAGCATAGAAGCTAAGACTTCAAGTTaaaaaaaaaaaa----GAGAG-G-AAAAT 1671
||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||
Sbjct 1568 AGTGGCAGCATAGAAGCTACGACTTCAAGTTAAAAAAAAAAAAAAAAGAGAGAGGAAAAT 1627
Query 1672 ATTCTCAATTCTTCATGAACTAAGCAACATTAAG-aaaaa-aa----GAGAAAAGAAGAT 1725
| ||||||||||| | ||||||||||||||||| ||||| || |||||||||||||
Sbjct 1628 ACCCTCAATTCTTCGTAAACTAAGCAACATTAAGTAAAAAGAAAAAAGAGAAAAGAAGAT 1687
Query 1726 TATTTTTGGGGTCTGAGATTTGATGGAAGCAGAGAGACTAAAGCTTCTGTCATTGACCAT 1785
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1688 TATTTTTGGGGTCTGAGATTCGATGGAAGCAGAGAGACCAAAGCTTCTGTCATTGACCAT 1747
Query 1786 TTGTCCATATATAATATATTCTCTCATACGGCCATCTCTC---CTCTCT---TGTT-T-- 1836
||||||||| |||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1748 TTGTCCATAGATAATATATTCTCTCATACGGCCATCTCTCTATCTCTCTCCCTCTTCTTT 1807
Query 1837 ATTTTTCTTGAATAACGAATTACTAATAAATGGCCTTATTCAAGC 1881
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1808 ATTTTTCTTGAATAACGA-TTACTAATAAATGGCCTTATTCAAGC 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70657404475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5