BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06420.1
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477945 jgi|Araly1|477945|fgenesh2_kg.3__646__AT3G06420.1 939 0.0
Ahg887478 jgi|Araly1|887478|Al_scaffold_0669_1 346 1e-94
> Ahg477945 jgi|Araly1|477945|fgenesh2_kg.3__646__AT3G06420.1
Length=683
Score = 939 bits (508), Expect = 0.0
Identities = 654/717 (91%), Gaps = 40/717 (6%)
Strand=Plus/Plus
Query 1 GTTTCTTCTCGAACAATCAAAAACGAACTAACCAAACATAAAATTGAACACATCCTCTTC 60
|||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1 GTTTCTTCTCGAACAAACAAAAACGAACCAACCAAACAAAAAATTGAACACA------TC 54
Query 61 CTCTGCTCTCTGCAAACaaa-aaaaCACCGATTCGGTCAGGAATCATTC-GTCGTGAAAT 118
|||||||||||||||||||| |||| | | | | | | |||| |||| |||||
Sbjct 55 CTCTGCTCTCTGCAAACAAACAAAA-AAC-A--C---C--G----ATTCGGTCG-GAAAT 100
Query 119 CTGTAATGGGGATTGTTGTCAAGTCTTTCAAGGATCAATTCTCCTCTGATGAGA-GATTG 177
|||||||||| || ||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 101 CTGTAATGGGTATCGTTGTGAAGTCTTTCAAGGATCAATTCTCCTCTGATGA-ACGATTG 159
Query 178 AAGGAGTCGAAC-AACATCATTGCGAAATATCCAGATAGAATACCTGTGATCATTGAGAA 236
|||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 160 AAGGAGTC-AACGAACATCATTGCCAAATATCCAGATAGAGTTCCTGTGATCATTGAGAA 218
Query 237 ATATTCAAACGCAGATCTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ATATTCAAACGCAGATCTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACAT 278
Query 297 GACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGC 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GACTGTTGGACATTTCATTCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGC 338
Query 357 TCTCTTTGTTTTCGTACACAACACTCTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTA 416
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 339 TCTCTTTGTTTTTGTACATAACACACTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTA 398
Query 417 CAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTT 476
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 399 CAATACTTTCAAAGAAGAAGATGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTT 458
Query 477 CGGCTAACAAAAGATTTGTCGCTTCATATC-GAAATCGAAGCGCACTCTGAATAATCCAT 535
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 459 TGGCTAACCAAAGATTTGTCGCTTCATATCTGA--TCGAAGCGCACTCTGAATAATCCAT 516
Query 536 TTGTTTGATTCCTATGTTTGTGAATAACGTCAGCTCTTGTTGTTACTGTTATTGTTGTTG 595
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 517 TTGTTTGATTCTTATGTTTGTGAATAACGTCAGCTCTTGTTGTT---GTTATTGTTATTG 573
Query 596 TTAGCTGACATTGTACAGAAAAGCTaaaaaaaaGAAAGACATTTGACTTTGTAAATTATG 655
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 574 TTAGCTGACATTGTACAGAAAAGCTAAAAAAAA-AAA-ACATTTGACTTTGTAAATTATT 631
Query 656 TATAA-TCCAACTATGGCAATAATAATAAGACCAAGTGATGATGATTCACACGAAAC 711
||||| || || |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 632 TATAACTCAAA-TATGGCAATAATAA---GAC-AGGTGATGATGATTCACACGAAAC 683
> Ahg887478 jgi|Araly1|887478|Al_scaffold_0669_1
Length=246
Score = 346 bits (187), Expect = 1e-94
Identities = 201/208 (97%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 276 ATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGAT 335
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 39 ATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATTCATATGCTAAGCAAAAGGAT 98
Query 336 GCAGTTAGATCCATCCAAAGCTCTCTTTGTTTTCGTACACAACACTCTTCCTCAAACCGC 395
||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 99 GCACTTAGATCGATCCAAAGCTCTCTTTGTTTTCGTACACAACACACTTCCTCAAACCGC 158
Query 396 TAGTCGCATGGACTCTCTCTACAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTG 455
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 159 TAGTCGCATGGACTCTCTCTACAATACTTTCAAAGAAGAAGATGGGTTCTTGTACATGTG 218
Query 456 CTACAGCACCGAGAAAACTTTCGGCTAA 483
||||||||||||||||||||| ||||||
Sbjct 219 CTACAGCACCGAGAAAACTTTTGGCTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26190443979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5