BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06433.1

Length=3444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951924 jgi|Araly1|951924|scaffold_25800001.1                      187    4e-46
  Ahg928322 jgi|Araly1|928322|scaffold_300779.1                        187    4e-46
  Ahg477947 jgi|Araly1|477947|fgenesh2_kg.3__648__AT3G06440.1          100    6e-20


> Ahg951924 jgi|Araly1|951924|scaffold_25800001.1
Length=719

 Score =  187 bits (101),  Expect = 4e-46
 Identities = 122/132 (92%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  75   GACAAAATGCCGCCGGAG-ACTAAGACCTTCAAGTACATGCCGTTTTGGCTATCGTTAGT  133
            ||||||||||||  || | |||||||||||||| ||||||||||||||||| ||||||||
Sbjct  477  GACAAAATGCCGGAGG-GTACTAAGACCTTCAAATACATGCCGTTTTGGCTGTCGTTAGT  535

Query  134  TCGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACATAATTGATATCTA  193
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  536  TAGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACACAATTGATATTTA  595

Query  194  CGTCCTTGTAAG  205
            ||||||| ||||
Sbjct  596  CGTCCTTATAAG  607


> Ahg928322 jgi|Araly1|928322|scaffold_300779.1
Length=690

 Score =  187 bits (101),  Expect = 4e-46
 Identities = 122/132 (92%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  75   GACAAAATGCCGCCGGAG-ACTAAGACCTTCAAGTACATGCCGTTTTGGCTATCGTTAGT  133
            ||||||||||||  || | |||||||||||||| ||||||||||||||||| ||||||||
Sbjct  448  GACAAAATGCCGGAGG-GTACTAAGACCTTCAAATACATGCCGTTTTGGCTGTCGTTAGT  506

Query  134  TCGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACATAATTGATATCTA  193
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  507  TAGTTTCATCAACGCTGGAATTTGGACTGCTTATTCTTTGATCTACACAATTGATATTTA  566

Query  194  CGTCCTTGTAAG  205
            ||||||| ||||
Sbjct  567  CGTCCTTATAAG  578


> Ahg477947 jgi|Araly1|477947|fgenesh2_kg.3__648__AT3G06440.1
Length=2094

 Score =  100 bits (54),  Expect = 6e-20
 Identities = 58/60 (97%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  1509  CGTAAACGTTGTTGCTTTTGTTGTATCGGGGCACACTTATCCGGATTTATCGATTATGCA  1568
             ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  2035  CGTAACCGTTGTTGCTTTTGTTGTATCGGGGCACACTTTTCCGGATTTATCGATTATGCA  2094



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 130042726941


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5