BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06435.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928283 jgi|Araly1|928283|scaffold_300740.1 625 4e-178
> Ahg928283 jgi|Araly1|928283|scaffold_300740.1
Length=650
Score = 625 bits (338), Expect = 4e-178
Identities = 534/628 (85%), Gaps = 16/628 (3%)
Strand=Plus/Plus
Query 65 aaaaaccccggcaacaatggccaaaaaatctaagcgaaaccaaaataataaaggaaagAC 124
||||| ||| ||||||||| |||||| ||||||| | || |||||| ||| |||| |
Sbjct 6 AAAAAACCCAGCAACAATGTCCAAAAGATCTAAGGGTAAGAAAAATAGGAAAAAAAAGCC 65
Query 125 GAAGATTCCCCAGAGAGTTGAAGTGTTTGGTGTGAATGATCCAGTAACCAGATTTGGTTG 184
||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 66 GAAAATTCCCCAGAGAGTTGAAGTTTTTGGTGTGAACGATCCAGTAACCAGAACTGGTTG 125
Query 185 GACTATCATGGCTTTTCTCTGCGTTTTTGGAGCTGTGGGTGCTGTGAATGCCTTGGAGAT 244
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 126 GACTATCTTGGCTTTTCTCTGCGTTTTTGGAGCTGTGAGTGCTGTGAATGCCTTGAAGAT 185
Query 245 CCAGATGGATGTC---T-C--TTATCTGGTAATGTTTGTTGTAGCTATCTATGTGATTCC 298
| ||||| ||||| | | ||||||| |||| |||||||| || ||||||||||| |
Sbjct 186 CGAGATGTATGTCGGTTACAAGTATCTGGGAATGGTTGTTGTATCTCTCTATGTGATT-C 244
Query 299 A-GTCTTGCA-TTCCATTTTCTCTGAAGCTCCATCTCCAGTTTACAGAGCACATCGATGG 356
| |||||| | |||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 245 ACGTCTTG-ACTTCCATGTTCTCTGAAGCTCCATTTCCGGTTTACAGAGCACATCGATGG 303
Query 357 GTGAGAACTG-TTATCCCTCTCATACTGCTTACCATAATCTACTTTACTGTCTTCAATTT 415
||||||| || || ||||||| |||||| ||| ||||||||||||||| |||||||||||
Sbjct 304 GTGAGAA-TGGTTGTCCCTCTGATACTGTTTAGCATAATCTACTTTACCGTCTTCAATTT 362
Query 416 CCAAACCCTTGCAGCATCTGTTTTGATCATATCAGTGGTTTTTGGAATTTTCGTGTTGGT 475
|| |||| |||| | ||| ||||||||| ||||| | |||||||||||||| ||||||||
Sbjct 363 CCCAACCTTTGCCGTATCAGTTTTGATCCTATCAATTGTTTTTGGAATTTTTGTGTTGGT 422
Query 476 TCAGTTGGTTTTCCCTGTAGAAAGATTTTACtttttttATGTAGTGCTCATTTTGTTATT 535
||||||||||||||| || || ||||| |||| |||||||||||| | |||||| ||||
Sbjct 423 TCAGTTGGTTTTCCCAGTCGACGGATTTCACTTCTTTTATGTAGTGGTTATTTTGGTATT 482
Query 536 TGGATGCTGCTCAGCTGTATTTGC-TGGTCAGTATGATCCCAAAACCCAGCCATTTGGGT 594
|||| | | ||| ||| | | ||| || | | |||||||| |||| |||||||||| |||
Sbjct 483 TGGAGGTTTCTCTGCTCTCTATGCATGCT-ATTATGATCCAAAAATCCAGCCATTTTGGT 541
Query 595 TCTGCCTATTAACTCTCTT-TGTTTTTGAAATGTTTTTCTACTTTTTCTACTATCCTGGG 653
||||| | || ||||| || |||||||||| ||||| |||||| |||| ||||||||||
Sbjct 542 TCTGCTTTTTTACTCT-TTATGTTTTTGAATTGTTTATCTACTATTTCAACTATCCTGGA 600
Query 654 CCTACTAATAGGGCATTCAAATTCTATT 681
|| ||| |||||||||||| |||||||
Sbjct 601 CCAACTCATAGGGCATTCAGTTTCTATT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5