BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06440.1
Length=2282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477947 jgi|Araly1|477947|fgenesh2_kg.3__648__AT3G06440.1 2488 0.0
Ahg928280 jgi|Araly1|928280|scaffold_300737.1 329 4e-89
> Ahg477947 jgi|Araly1|477947|fgenesh2_kg.3__648__AT3G06440.1
Length=2094
Score = 2488 bits (1347), Expect = 0.0
Identities = 1488/1557 (96%), Gaps = 5/1557 (0%)
Strand=Plus/Plus
Query 484 CTACATTGGCAATGAAAGGTTTGGTTTTAGAAATCAATAGAGAG-AAGAGAGCTTATTCT 542
|||| ||||| ||||||| ||||||||| ||||||| |||| ||| |||||| ||||
Sbjct 302 CTACTTTGGCCATGAAAGATTTGGTTTTTCTGATCAATAAAGAGAAAG-GAGCTTCTTCT 360
Query 543 TCTGGTATGGTCTCTAAGGAAATTAGAAGAATCTGTCCGGATTTTGTCACTGCATTTGAT 602
|||| ||||||||| |||||| || ||| || ||||||||||||||||||||||||||||
Sbjct 361 TCTGCTATGGTCTCCAAGGAACTTGGAATAAACTGTCCGGATTTTGTCACTGCATTTGAT 420
Query 603 AAGGATTTGTCTGGTTTAAGTCATGTACTTCTTGAGCTTCCTTGTGGTTTAATTGAAGAT 662
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GAGGATTTGTCTGGTTTAAGGCATGTACTACTTGAGCTTCCTTGTGGTTTAATTGAAGAT 480
Query 663 TCTTCAATAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAGATTCAGCTC 722
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTTCAGTAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAGATTCAGCTC 540
Query 723 GTTGGCTCGGGATTATCAGGAGAAACTCGTCGGCCAATAATCTTGCGTTACAATGTGAAC 782
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 541 GTTGGCTCGGGATTATCAGGCGAAACCCGTCGGCCAATAATCTTGCGTTACAATGTGAAT 600
Query 783 TTTTCTAAACCATCGATAGTGCAAAATACATGGACAGAGAAGCTAGGTTGGGGAAACGAA 842
||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 601 TTTTCTAGGCCATCCATAGTGCAAAATACATGGACAGAAAAGCTCGGTTGGGGAAACGAA 660
Query 843 GAGCGATGCCAATATCATGGATCA-TTGAAAAATCATTTAGTTGATGAACTTCCTCTCTG 901
| |||||||| | ||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 661 GTGCGATGCCCAGATCATGGATCAGTT-AAAAATCATTTAGTTGATCAACTTCCTCTCTG 719
Query 902 CAACAAACAGACCGGTAGAATCATTTCGGAAAAGAGTTCCAACGATGATGCAACTATGGA 961
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 CAACAAACAGACCGGTAGAATCACTTCGGAAAAGAGTTCCAACGATGATGCAACTATGGA 779
Query 962 ACTTTCTCTTTCAAATGCTAATTTTCCATTTCTCAAAGGGAGTCCCTTCACTGCCGCATT 1021
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 780 ATTTTCTCTTTCAAATGCTAATTTTCCAGTTCTCAAAGGGAGTCCTTTCACTGCCACATT 839
Query 1022 GTGGTTTGGCTTAGAAGGTTTTCATATGACGATAAATGGGCGGCACGAGACTTCATTTGC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGGTTTGGCTTAGAAGGTTTTCATATGACGATAAATGGGCGGCACGAGACTTCATTTGC 899
Query 1082 TTACAGGGAGAAGCTCGAGCCATGGTTAGTCAGTGCAGTCAAAGTCTCAGGTGGTTTGAA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTACAGGGAGAAGCTCGAGCCATGGTTAGTCAGTGCAGTCAAAGTCTCAGGTGGTTTGAA 959
Query 1142 AATTTTATCTGTCTTAGCCACAAGACTGCCCATTCCCGATGACCATGCATCTTTAATCAT 1201
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 960 AATGTTATCTGTCTTAGCCACAAGACTGCCCATTCCCGATCACCATGCTTCTTTAATCAT 1019
Query 1202 AGAAGAGAAACTTAAAGCTCCATCTCTTTCCGGGACAAGAATAGAACTATTGGTGGGTGT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAAGAGAAACTTAAAGCTCCATCTCTTTCCGGGACAAGAATAGAACTATTGGTGGGTGT 1079
Query 1262 TTTCTCCACTGGAAATAATTTTAAGCGGCGTATGGCATTGAGAAGATCTTGGATGCAATA 1321
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCTCCACTGGAAATAATTTTAAACGGCGTATGGCATTGAGAAGATCTTGGATGCAATA 1139
Query 1322 CGAGGCAGTAAGATCTGGCAAAGTAGCTGTTCGATTTCTCATTGGCCTTCACACAAATGA 1381
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1140 CGAGGCAGTAAGATCTGGCAAAGTGGCTGTTCGATTTCTCATTGGCCTTCACACGAAGGA 1199
Query 1382 AAAAGTCAATTTAGAGATGTGGAGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCC 1441
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAAAGTCAATTTAGAGATGTGGCGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCC 1259
Query 1442 ATTTGTTGACTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGAC 1501
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATTTGTTGATTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGAC 1319
Query 1502 CAAAGTCATCCCAGCAAAATACATAATGAAGACGGATGATGATGCGTTTGTACGGATTGA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 CAAAGTCATCCCAGCAAAATACATAATGAAGACGGATGATGATGCGTTTGTGCGGATTGA 1379
Query 1562 TGAGCTCCTATCAAGTCTAGAAGAAAGACCGTCTAGTGCCCTTCTGTACGGTTTGATCTC 1621
||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||
Sbjct 1380 TGAACTCCTATCAAGTCTAAAAGAAAAACCGTCTAGTGCCCTTTTGTACGGTTTGATATC 1439
Query 1622 ATTTGATTCATCACCGGACCGTGAACAAGGCAGCAAATGGTTTATCCCTAAAGAGGAATG 1681
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1440 ATTTGATTCATCACCGGACCGTGAACAAGGCAGCAAATGGTTTATCCGTAAAGAGGAATG 1499
Query 1682 GCCTTTAGATTCATACCCTCCATGGGCACATGGCCCTGGCTACATCATCTCTCATGATAT 1741
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1500 GCCTTTAGATTCATACCCTCCATGGGCACATGGCCCTGGCTATATCATCTCTCATGATAT 1559
Query 1742 AGCGAAATTTGTGGTGAAGGGTCACCGTCAAAGAGATCTTGGACTTTTCAAGCTGGAAGA 1801
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1560 CGCGAAATTTGTGGTGAAGGGTCACCGTCAAAGAGATCTTAGACTTTTCAAGCTGGAAGA 1619
Query 1802 TGTGGCGATGGGGATATGGATTCAACAATTCAACCAGACGATAAAAAGAGTGAAGTACAT 1861
|||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1620 TGTGGCGATGGGGACATGGATTCAACAATTCAACGAGACAATAAAAAGAGTTAAGTACAT 1679
Query 1862 CAATGACAAAAGATTTCATAACAGTGATTGTAAATCAAATTACATTCTTGTTCATTACCA 1921
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1680 CAATGACAAAAGATTTCATAACAGTGGTTGTAAATCAAATTACATTCTTGTTCATTACCA 1739
Query 1922 AACTCCTAGACTAATTTTGTGTCTTTGGGAGAAGCTGCAAAAAGAGAACCAATCTATTTG 1981
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AACTCCTCGACTAATTTTGTGTCTTTGGGAGAAGCTGCAAAAAGAGAACCAATCTATTTG 1799
Query 1982 CTGCGAATAAATCTCTCGAGCATGTACGTATGTAACTTTTCTGGTTCTGTTTC-ACA 2037
|||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||
Sbjct 1800 CTGCGAATAAATCTCTCGAGCATGCAAGTATGTAACCTTTCTGGTTCTGTTTCTACA 1856
Score = 390 bits (211), Expect = 2e-107
Identities = 274/302 (91%), Gaps = 14/302 (5%)
Strand=Plus/Plus
Query 132 ATGAAGCAATTCATGTCAGTGGTGAGATTCAAATTTGGTTTCACTTCAGTCAGAATGAGG 191
|||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCAATTCATGTCAGTGGTGAGGTTTAAATTTGGTTTCACTTCAGTCAGAATGAGG 60
Query 192 GATTGGTCGGTGGGAGTCTCCATTATGGTTCTTACATTGATCTTCATCATCCGTTATGAA 251
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GATTGGTCGGTGGGAGTCTCCATTATGGTTCTCACATTGATCTTCATCATCCGTTATGAA 120
Query 252 CAATCTGATCACAC-T--C-A-C-A----C--TGTGGATGATTCTAGTATAGAAGGAGAG 299
||||||||||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 121 CAATCTGATCACAAATTTCCAACGAATTACACTGTGGATGATTCTAGTATAGAAGGAGAG 180
Query 300 AGTGTTCATGAACCCGCAAAGAAGCCACATTTTATGACTTTGGAAGATCTTGATTATCTA 359
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 AGTGTTCATGAACCAGCAAAGAAGCCACATTTTATAACTTTGGAGGATCTTGATTATCTA 240
Query 360 TTTTCAAACAAGAGCTTTTTTGGAGAAGAAGAAG-TGTCCAATGGAATGCTTGTATGGTC 418
||||||||||| |||||||| ||||||||||||| | | || ||| |||||||||||||
Sbjct 241 TTTTCAAACAAAAGCTTTTTCGGAGAAGAAGAAGATTTGAAA-GGATTGCTTGTATGGTC 299
Query 419 TC 420
||
Sbjct 300 TC 301
Score = 104 bits (56), Expect = 3e-21
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 2201 ATTCATTGTCC--T--CGTAAACGTTGTTGCTTTTGTTGTATCGGGGCACACTTATCCGG 2256
||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2019 ATTCATTGTCCATTGACGTAACCGTTGTTGCTTTTGTTGTATCGGGGCACACTTTTCCGG 2078
Query 2257 ATTTATCGATTATGCA 2272
||||||||||||||||
Sbjct 2079 ATTTATCGATTATGCA 2094
> Ahg928280 jgi|Araly1|928280|scaffold_300737.1
Length=289
Score = 329 bits (178), Expect = 4e-89
Identities = 233/259 (90%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 477 GAAGAAGCTACATTGGCAATGAAAGGTTTGGTTTTAGAAATCAATAGAGA-GAAGAGAGC 535
||||||||||||||||| ||||||| ||||||||| || |||| ||| ||| ||||
Sbjct 3 GAAGAAGCTACATTGGCCATGAAAGATTTGGTTTTTCTGATTAATAAAGACAAAG-GAGC 61
Query 536 TTATTCTTCTGGTATGGTCTCTAAGGAAATTAGAA-GAATCTGTCCGGATTTTGTCACTG 594
|| |||||||| |||||||||||| ||| || ||| ||| ||||||||||||||||||||
Sbjct 62 TTCTTCTTCTGCTATGGTCTCTAACGAACTTGGAAGGAA-CTGTCCGGATTTTGTCACTG 120
Query 595 CATTTGATAAG-GATTTGTCTGGTTTAAGTCATGTACTTCTTGAGCTTCCTTGTGGTTTA 653
|||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 CATTTGAT-GGAGATTTGTCTGGTTTAAGGCATGTACTACTTGAGCTTCCTTGTGGTTTA 179
Query 654 ATTGAAGATTCTTCAATAACTTTGGTTGGTATTCCTGATGAACATTCTAGTAGCTTCCAG 713
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 180 ATTGAAGATTCTTCAGTAACTTTGGTTGGTATTCCTGATGAACATTCTAGAAGCTTTCAG 239
Query 714 ATTCAGCTCGTTGGCTCGG 732
|||||||||||||||||||
Sbjct 240 ATTCAGCTCGTTGGCTCGG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85931592720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5