BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06460.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1 1282 0.0
Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1 730 0.0
> Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1
Length=941
Score = 1282 bits (694), Expect = 0.0
Identities = 847/922 (92%), Gaps = 6/922 (1%)
Strand=Plus/Plus
Query 1 AAACTAACTTCGCTAGAGAATAATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGT 60
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAACTAACTTCGCTGGATAATAATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGT 60
Query 61 CCACCACCCCTACATTGCCAACTTCACGTGGACCGAAGGTGAAACACTAGGCTCCACCGT 120
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 GCACCACCCCTACATCGCCAACTTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGT 120
Query 121 TTTCTTTGTCTTTGTCGTCGTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACAC 180
|||||||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 121 CTTCTTTGTCTCCGTCGTCGTTTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACAC 180
Query 181 CGTCGATTCACTCCCCACACTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAG 240
||| |||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 181 CGTGGATTCACTCCCCTCTCTCGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAG 240
Query 241 CCTCATTCTCTTCCTCCTCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAATCTC 300
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCATTCTCTCCCTCCTATCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAATCTC 300
Query 301 TTCCTC-GGACCCGAAGGCGCGTCTCTTCGACGCCGTTTGTTTCCCCCTCGACGTGAAAC 359
| ||| || ||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 301 GT-CTCAAGATCCGAAGGCGCGCCTCTTCGACGCCGTTTGTTTCCCAGTCGATGTGAAAC 359
Query 360 CTAAGGGACCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCG 419
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 360 CTAAGGGACCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCG 419
Query 420 TAGACACACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TAGACACACTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCT 479
Query 480 ACCACCACGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGT 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 480 ACCACCACGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGT 539
Query 540 TTCCTG-TTGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTC 598
|||| | || | |||||| |||||||||||||||||| ||||||||||| ||||| |||
Sbjct 540 TTCC-GATTTGTCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTC 598
Query 599 CTCTGCGCTATCGGATCGAGGCCCAAGTGGAAGAAGTTGGTGACGAATTTTCAAATGGTT 658
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 599 CTCTGCGCCGTTGGATCGAGGCCCAAGTGGAAGAAGTTGGTGACGAATGTTCAAATTGTT 658
Query 659 CAGTTTGCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATTTCGGG 718
||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 659 CAGTTTGTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCGGAGCATTATTTCGGG 718
Query 719 TCGGGTTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATT 777
|| |||||| ||||||||||| || ||| |||||||||||||||||| ||||||||| ||
Sbjct 719 TCAGGTTGCTCCGGGATTTGGGCAAGTT-ATTTCAATGGTGTGTTTAGTGCTTCTCTCTT 777
Query 778 GGCTCTCTTCTACAACTTCCACTCCAAGAACTATGAGAAGACTACAACGTCGCCTTTGTA 837
||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| | ||||
Sbjct 778 GGCTCTCTTCTACAACTTCCATTCCAAAAACTACGTGAAGACTACAACCTCGCGTATGTA 837
Query 838 TAAGATCGAATCCTTTATATTTATTCACGGAGAGAGGTGGGCAAATAAAGCGATTACATT 897
|||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||
Sbjct 838 TAAGATCGAATCCTTTCTATTTATAAACGGAGAGAGGTGGGCAAAGAAAGCGATTAGATT 897
Query 898 ATTTTCCAAGAAAAACGATTAA 919
|||||||| |||||| ||||||
Sbjct 898 ATTTTCCATGAAAAATGATTAA 919
> Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1
Length=980
Score = 730 bits (395), Expect = 0.0
Identities = 677/810 (84%), Gaps = 32/810 (4%)
Strand=Plus/Plus
Query 22 AATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGTCCACCACCCCTACATTGCCAA 81
||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 11 AATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCTACATCGCCAA 70
Query 82 CTTCACGTGGACCGAAGGTGAAACAC-TAGGCTCCACCGTTTTCTTTGTCTTTGTCGTC- 139
||||| |||| |||||||||||| | ||||||||||||| ||||| |||| |||| |
Sbjct 71 TTTCACTTGGATCGAAGGTGAAAC-CTTAGGCTCCACCGTCTTCTTCGTCTCCGTCG-CT 128
Query 140 GTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACACCGTCGATTCACTCCCCACA 199
|||||| |||||||||||||||||||| ||||||||| | | |||||||||||||||||
Sbjct 129 GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCACTCCCCACA 188
Query 200 CTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAGCCTCA-TTCTCT-TCCTCC 257
||| ||||||| || ||||||||||||||||||||||||||||| | | |||| | ||||
Sbjct 189 CTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCT-AGTCCTCTGT-CTCC 246
Query 258 TCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAA--TC-TCT------TCCTCGG 308
| ||||||| ||||||||||||||||||||||||| ||| || ||| || || |
Sbjct 247 TATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGCGTCTTCAG 306
Query 309 ACCCGAAGGCGCGTCTCTTCGACGCCG-TTTGTTTCCCCCTCGACGTGAAACCTAAGGGA 367
| |||| ||||||| || | ||| || ||||||||||||||||||| |||||||| |||
Sbjct 307 ATCCGACGGCGCGTTTCCTAAACG-CGATTTGTTTCCCCCTCGACGTTAAACCTAACGGA 365
Query 368 CCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCGTAGACA-C 426
||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||| |
Sbjct 366 CCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCGGAGACACC 425
Query 427 ACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 486
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 A-TCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 484
Query 487 CGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGTTTCCTGT 546
||| ||||||||| | |||| || |||||| | ||||| || || ||||||||||| ||
Sbjct 485 CGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGTTTCCGGT 544
Query 547 TGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTCCTCTGCGC 606
|| ||||||| ||| |||||||| || || || |||||||| ||||| |||||||||||
Sbjct 545 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 604
Query 607 TATCGGATCGAGGCCCAAGT-GGAAGA-AGTTGGTGACGAATTTTCAAATGGTTCAGTTT 664
| ||||||||||| | || |||||| | ||||||||| ||| ||| || |||||||||
Sbjct 605 CGTTGGATCGAGGCCGA-GTTGGAAGAGA-TTGGTGACGGATTGTCAGATTGTTCAGTTT 662
Query 665 GCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATT-TCGGGTCGGG 723
| |||| | | || ||| ||| ||||||||||| |||||||| | ||||||||||
Sbjct 663 GTTTTCAGTTTCGGATTAT---CCGGTTGGATGCTCCGAGAGCATT-TGATCGGGTCGGG 718
Query 724 TTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATTGGCTC 782
|||| ||||||||||| | | | |||||| | || ||||| ||||||||| |||||||
Sbjct 719 TTGCTCCGGGATTTGGGGATGGTG-TTTCAACGCTGCGTTTAATGCTTCTCTTTTGGCTC 777
Query 783 TCTTCTACAACTTCCACTCCAAGAACTATG 812
|||| | |||||| || || ||||| ||||
Sbjct 778 TCTTTTCCAACTTTCATTCAAAGAATTATG 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5