BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06490.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477955 jgi|Araly1|477955|fgenesh2_kg.3__656__AT3G06490.1 1932 0.0
> Ahg477955 jgi|Araly1|477955|fgenesh2_kg.3__656__AT3G06490.1
Length=1348
Score = 1932 bits (1046), Expect = 0.0
Identities = 1246/1336 (93%), Gaps = 39/1336 (3%)
Strand=Plus/Plus
Query 373 ATTCAAAACTCATCCTATCTCTATCTACACATAACTCcaaaaaacaaacaaattttctct 432
|||| ||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATTCGAAACTCATCCTTTCTCTATCTACACATAACTCCAAAAAA-AAA-AAA-------- 50
Query 433 ctctatctctcttcgcaaaacaacatagaaaaaaaGTAGAAAGTCTCAATCTTTTTGCTG 492
| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 51 ----A--ACTCTTCGCAAAACAACATAG-AAAAAAGTAGAAAGTCTCAATCTTTTTGCTG 103
Query 493 AACAA-TCTTGTTGTG-GTCTCTTCTGTGTATATCAATGGATGAAAAAGGAAGAAGCTTG 550
|| || ||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 104 AA-AAGTCTCGTTGTGCGTCTTTTCTGTGTGTATCAATGGATGAAAAAGGAAGAACCTTG 162
Query 551 AAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAA 222
Query 611 GATTTTAAGCTCATGAATTACATTGCTACTAATGGAGAAGGTCGCTGGAACTCTCTTTCT 670
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 223 GATTTTAAGCTCATGAATTACATTGCTACTAATGGAGAAGGTCGATGGAACTCTCTTTCT 282
Query 671 CGTTGCGCCGGCCTCCAACGCACCGGTAAAAGCTGTAGACTAAGGTGGTTAAACTATCTC 730
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 283 CGTTGCGCCGGACTCCAACGTACCGGTAAAAGCTGTAGACTACGGTGGTTAAACTATCTC 342
Query 731 CGCCCTGACGTCCGCCGTGGAAACATTACACTTGAAGAACAACTCTTGATCCTCGAACTT 790
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 343 CGCCCTGACGTCCGCCGAGGAAACATTACACTCGAAGAACAACTCTTGATCCTCGAACTT 402
Query 791 CATTCCCGTTGGGGAAATAGATGGTCAAAAATCGCACAATATTTACCGGGAAGAACGGAC 850
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CATTCCCGTTGGGGCAATAGATGGTCAAAAATCGCACAATATTTACCGGGAAGAACGGAC 462
Query 851 AACGAGATCAAGAACTACTGGAGGACGCGGGTGCAAAAGCATGCGAAACAGTTGAAATGT 910
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 463 AACGAGATCAAGAACTACTGGAGGACGCGAGTGCAAAAGCATGCGAAACAGTTGAAATGT 522
Query 911 GATGTGAATAGCCAACAATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGACTAGTC 970
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 523 GACGTGAACAGCCAACAATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGGCTAGTC 582
Query 971 GAGAGGATTCAGTCAGCCTCGGCCTCATCCGCAGCAGCAGccaccaccacaaccaccacc 1030
|||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 583 GAGAGGATCCAGTCAGCCTCGGCCTCAGCCGCAGCAGCAGCCACCACTACAACCACCAAC 642
Query 1031 accacAGGATCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAAT 1090
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACCACGGGTTCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAAT 702
Query 1091 TACGACTACAACAACAACAACATGGGACAACAGTTTGGTGTAATGAGCAACAATGATTAT 1150
||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 703 TACGAATACAACAACAACA---TGGGACAACAGTATGGTGTGATGAGCAACAATGATTAT 759
Query 1151 ATCACGCCTGAAAATTCCAGCGTGGCAGTGTCTCCGGCGTCAGACTTAACGGAGTACTAC 1210
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 760 ATCACGCCGGAAAATTCCAGCGTTGCAGTGTCTCCGGCGTCAGACTTGACGGAGTACTAC 819
Query 1211 AGCGCTCCAAACCCTAACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCA 1270
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AGCGCTCCAAACCCGAACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCG 879
Query 1271 GATCAGAATTTAGTGAGTTCACAATTATTACCGGATAATTATTTCGACTATAGTGGATTA 1330
||||||||||| ||| ||||||||||||||||||| ||||||||||| || | |||||||
Sbjct 880 GATCAGAATTTGGTGGGTTCACAATTATTACCGGAGAATTATTTCGATTACAATGGATTA 939
Query 1331 TTAGACGAAGATCTAACGGCTATGCAAGAGCAGAGTAACCTCAGCTGGTTTGAAAACATT 1390
|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 940 TTAGACGAAGATCTAACGACTATGGAAGAGCAGAGTAACCTCAACTGGTTTGAAAACATT 999
Query 1391 AATGGTGCTGCTTCTTCTTCAGACAGTTTATGGAACATTGGAGAAACTGATGAAGAATTC 1450
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1000 AATGGTGCTGCTTCTTCGTCAGACAGTTTATGGAACATTGGAGAAACTGATGAAGACTTC 1059
Query 1451 TGGTTCTTACAGCAGCAACAACAGT-TCAACAATAATGGTAGCTTCTGAAGTT--A--G- 1504
||||||||||||||||||||||| | |||||||||||||||||||||||| || | |
Sbjct 1060 TGGTTCTTACAGCAGCAACAACA-TCTCAACAATAATGGTAGCTTCTGAATTTTGAAAGC 1118
Query 1505 aaa-aaaaaa-a-TAGAAATCGTTTTAAGTTAA--ATTATACACTATAGTATACGTGTGA 1559
||| |||||| | |||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1119 AAAGAAAAAAGACTAGAAATCGTTTTAAGTTTATTATTATACACTA-AGTATACGTGTGA 1177
Query 1560 AAGGAATTTGTTGT-AAGGGAATAATTAAAAACAAAGAAT-TGTTCATAGGATATATGAT 1617
||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1178 AAGGAATTTGT-GTTAAGGGAATAATTAAAGACAAAGAATGTGTTCATAGGATATATGAT 1236
Query 1618 CAGGTTTTTTATACCAAGCTTGATCATATATCATGGCGTTTTAACAAAGCGCTAAACTTG 1677
||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1237 CAGCTTTTTTATTCCAAGCTTGATCATGTATCATGGCGTTTTAACATAGCGCTAAACTTG 1296
Query 1678 ATTGGTTTTGTTTTTT 1693
||||||||| ||||||
Sbjct 1297 ATTGGTTTTTTTTTTT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5