BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06500.1
Length=2459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928294 jgi|Araly1|928294|scaffold_300751.1 3044 0.0
Ahg474815 jgi|Araly1|474815|fgenesh2_kg.1__4769__AT1G56560.1 671 0.0
> Ahg928294 jgi|Araly1|928294|scaffold_300751.1
Length=2011
Score = 3044 bits (1648), Expect = 0.0
Identities = 1896/2014 (94%), Gaps = 24/2014 (1%)
Strand=Plus/Plus
Query 218 ATTATTCGAGAGAATGAACAGTAGAAGCTGTATCTGTGTCTCTGCGATGAAACCCTGTTG 277
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 8 ATTATTGGAGAGAATGAACAGTAGGAGCTGTATCTGTGTCTCTGCGATGAAACCCTGTTG 67
Query 278 TAGATTTCTTATTAGTTTTAGAAGTTCCTCGCTTTTCGGTTTTTCTCCCCCGAACTCTGG 337
|||||||||||||||||||| |||||||||||||||| | | |||
Sbjct 68 TAGATTTCTTATTAGTTTTACAAGTTCCTCGCTTTTC-G------------G-----TGG 109
Query 338 CAAATTCATCAATTCGTCGAAGTTACACTGTACAAAGATTGATTCCAGGAGTATTAGATC 397
||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 110 CAAATTCATCAGTTCGTCCAAGTTACGCTGTACAAAGATTGATTCCAGAAGTATTAGATC 169
Query 398 TGGTATTCATTGCCGTCGGATTGTTCTGGATCGGAATGCTTTTTGTGATTCCGATTCCAT 457
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 170 TGGTATTCATTGCCGTCGGATTGTTCTGGATCGGGATGGTTTTTGTGATTCCGATTCCAT 229
Query 458 TAGCTGGGGAGGAGGAGGATCTAGAGTTTTAAGAGCTAGAGGTAGTAGTAGAGGAAGAGG 517
||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 230 TAGTTGGGGAGGAGGAGGATCTAGAGTTTTAAGAGCTAGA-G--GTAGTAGAGGAAGAGG 286
Query 518 AAGGGGTGTTTTAGTAATTCCCCATGTAGCTTCAGATTTTAGGAACTATTCGACCTCTTC 577
||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 287 AAGGGGTGTTTTAGTAATTCCCCGTGTAGCTTCAGATTTTAGGAACCATTCGACTTCTTC 346
Query 578 GTTGGATTCTCATGTAAATGATAAGAGCTTTGAGAGTATGTTTGTGAAGCCACTTGTTTT 637
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 347 GTTGGATTCTCATGTAAGTGATAAGAGCTTTGAGAGTATGTTTGTCAAGCCACTGGTTTT 406
Query 638 TAAGGAAGTGGAAAAAACTGAAGGGATACCGAAAAGGGAAAGGGGTAATGTAGGAGGAGG 697
|||||| ||||| ||||||||| |||||||||||| |||||| ||||| | ||||||||
Sbjct 407 TAAGGATGTGGAGAAAACTGAAAGGATACCGAAAAAGGAAAGTGGTAA--T-GGAGGAGG 463
Query 698 AAAAGATGCTAATTTTGGAAATGTGGGTGTAAGAAAGGAAACAGAACGGTGTTTGAGTCA 757
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 464 AAAAGATGCTAATTTTGGAAATGTGGGTGTAAGAAAGGAAACAGAACGGGGTTTGAGTCA 523
Query 758 GACTGAGGTTGAGAAGGAGGCGTGGAAGCTGCTTCGTGGTGCCGTGGTGAACTACTGTGG 817
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 524 GACTGAGGTTGAGAAGGAGGCGTGGAAGCTGCTTCGTGGTGCCGTGGTGAATTACTGCGG 583
Query 818 GTTCCCTGTGGGGACTGTAGCGGCTAATGATCCAGGGGATACGCAGACTTTGAACTATGA 877
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 584 GTTCCCGGTGGGGACTGTAGCGGCTAATGATCCAGGGGATACACAGACCTTGAATTATGA 643
Query 878 TCAAGTGTTTATTCGTGATTTTGTTCCTTCGGCGTATGCGTTTATGCTTGATGGAGAAGG 937
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 644 TCAGGTGTTTATTCGCGATTTTGTTCCTTCGGCGTATGCTTTTATGCTTGATGGAGAAGG 703
Query 938 GGAGATTGTTAGAAACTTTCTCCTTCATACATTGCAGTTGCAGAGCTGGGAGAAAACAGT 997
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 704 GGAGATTGTCAGAAACTTTCTTCTTCATACATTGCAGTTGCAGAGCTGGGAGAAAACGGT 763
Query 998 GGACTGTCACAGCCCTGGCCCGGGGCTAATGCCAGCGAGTTTTAAAGTGAAATCTGCGCC 1057
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 764 GGACTGTCACAGCCCTGGCCCAGGGCTAATGCCAGCGAGTTTTAAAGTGAAATCTGAGCC 823
Query 1058 ACTTGAGGGAAATGATGGTTCATTTGAGGAGTTTTTAGATCCAGACTTTGGTGGATCAGC 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ACTTGAGGGAAATGATGGTTCATTTGAGGAGTTTTTAGATCCAGACTTTGGTGGATCAGC 883
Query 1118 CATTGGACGTGTTAGCCCTGTTGACTCTGGTTTGTGGTGGATCATATTGCTGAGAGCTTA 1177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CATTGGGCGTGTTAGCCCTGTTGACTCTGGTTTGTGGTGGATCATATTGCTGAGAGCTTA 943
Query 1178 TGGAAAGCTCACGGGTGACTACACGTTGCAAGAGAGAATTGATGTTCAAACAGGGATCAA 1237
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 944 TGGAAAGCTCACGGGTGACTACATGTTGCAAGAGCGAATTGATGTTCAAACAGGGATCAA 1003
Query 1238 GTTGATACTCAAGCTTTGTCTAGCCGACGGTTTTGACATGTTCCCGACTCTACTTGTCAC 1297
||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 1004 GTTGATACTAAAGCTGTGTCTAGCCGATGGCTTTGACATGTTCCCGACTCTTCTTGTGAC 1063
Query 1298 TGACGGATCATGTATGGTTGATCGAAGAATGGGGATTCATGGGCATCCACTTGAAATCCA 1357
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1064 TGACGGATCATGTATGATTGATCGAAGAATGGGCATTCATGGGCATCCACTTGAAATCCA 1123
Query 1358 AGCATTATTCTACTCCGCTCTCCGTTGTGCTCGAGAGATGCTTATTGTGAATGATGGAAC 1417
|||||| |||||||| |||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 1124 AGCATTGTTCTACTCTGCTCTCCGCTGTGCCCGAGAGGTGCTTATTGTGAATGATGGAAC 1183
Query 1418 CAAGAGCTTAGTTACTGCAGTCAACAATCGCCTAAGTGCTTTATCATTCCATATCAGAGA 1477
||||| ||||||| |||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1184 CAAGAACTTAGTTGCTGCGGTTAACAATCGCCTAAGTGCTTTATCGTTCCATATCAGAGA 1243
Query 1478 GTACTATTGGGTGGATATTAAGAAAATCAACGAGATATACCGTTACAACACAGAGGAGTA 1537
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1244 GTACTATTGGGTGGATATCAAGAAAATCAACGAGATATACCGTTACAACACTGAGGAGTA 1303
Query 1538 TTCAGCAGATGCAACAAACAAGTTTAACATATATCCAGAACAGATCCCTACTTGGCTTGT 1597
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1304 TTCAGCAGATGCAACCAACAAGTTTAACATATATCCGGATCAGATCCCTACTTGGCTTGT 1363
Query 1598 CGACTGGATTCCTGATAAAGGCGGTTACTTCATAGGAAATCTCCAGCCTGCTCACATGGA 1657
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1364 CGACTGGATTCCTGATAAAGGCGGTTACTTCATAGGAAATCTTCAGCCTGCTCACATGGA 1423
Query 1658 TTTCAGATTCTTCACACTTGGAAACCTCTGGGCCGTTATTTCGTCTTTGGGAAACCAAGA 1717
||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1424 TTTCAGATTCTTCACGCTTGGAAACCTCTGGGCCGTTATTTCATCTCTGGGAAACCAAGA 1483
Query 1718 ACAGAATGAAGGAGTCATGACATTGATTGAAGAGAAATGGGATGATCTTGTTGCAAACAT 1777
|||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1484 ACAGAACGAAGGAGTCATGACACTAATCGAAGAGAAATGGGATGATCTTGTTGCAAACAT 1543
Query 1778 GCCTCTCAAGATCTGTTTTCCGGCTCTGGAGAAAGATGAATGGCGAATAATCACCGGATC 1837
|||||||||||| |||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 1544 GCCTCTCAAGATTTGTTTTCCGGCTCTAGAGAAAGACGAATGGCGAATAATTACTGGATC 1603
Query 1838 TGATCCAAAGAATACGCCTTGGTCATATCACAATGGCGGATCCTGGCCAACTCTCCTCTG 1897
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1604 TGATCCAAAGAACACGCCTTGGTCATACCACAATGGTGGATCCTGGCCAACTCTCCTCTG 1663
Query 1898 GCAGTTCACATTGGCTTGTATTAAGATGGGAAAGCTAGAACTGGCGAAGAAAGCAGTTGC 1957
|||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1664 GCAGTTTACATTGGCTTGTATCAAGATGGGGAAGCTCGAACTGGCGAAGAAAGCAGTTGC 1723
Query 1958 TGTAGCAGAAAAAAGGCTAAAGGAAGATGAGTGGCCTGAGTATTATGACACGAAAAGCGG 2017
||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1724 TGTAGCAGAGAAAAGGCTCAAGGAAGATAAATGGCCTGAGTATTATGACACGAAAAGCGG 1783
Query 2018 AAGGTTTGTGGGGAAACAATCAAGGCTTTACCAGACTTGGACCATAGCGGGTTTCTTGGC 2077
|| || |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1784 GAGATTCGTGGGGAAACAATCAAGGCTTTACCAGACTTGGACCATCGCAGGTTTCTTGGC 1843
Query 2078 AGCTAAGAAACTAATAGAGCAACCTGAGAAAGCATCACTCTTGTTCTGGGAAGAGGACTA 2137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 AGCTAAGAAACTCATAGAGCAACCTGAGAAAGCATCACTCTTGTTCTGGGAAGAGGACTA 1903
Query 2138 TCAGCTGCTCGAGACTTGTGTCTGTGGCCTCAGTAAAAGCAGCGGAAGGAAGAACAAGTG 2197
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1904 TCAGCTGCTCGAGACTTGTGTCTGTGGCCTGAGTAAAAGCAACGGAAGGAAGAACAAGTG 1963
Query 2198 TTCGCGTTTCACACCTCCAAGATCTTAGTTTCCT 2231
||||||||||||||||||||||||||||||||||
Sbjct 1964 TTCGCGTTTCACACCTCCAAGATCTTAGTTTCCT 1997
> Ahg474815 jgi|Araly1|474815|fgenesh2_kg.1__4769__AT1G56560.1
Length=1955
Score = 671 bits (363), Expect = 0.0
Identities = 1068/1400 (76%), Gaps = 81/1400 (6%)
Strand=Plus/Plus
Query 813 TGTGGGTTC-CCTGTGGGGACTGTAGCGGCTAATGATCCAGGGGATACGCA-GACTTTGA 870
||| ||||| || || |||||||| ||||| |||||||| || |||| | | | ||||||
Sbjct 422 TGT-GGTTCGCCGGTAGGGACTGTGGCGGCGAATGATCCTGGAGATAAG-ATGCCTTTGA 479
Query 871 ACTATGATCAAGTGTTTATTCGTGATTTTGTTCCTTCGGCGTAT-GCGTTTATGCTTGAT 929
| |||||||||||||||||| | |||||||| ||||| || | | || ||| ||||| |
Sbjct 480 ATTATGATCAAGTGTTTATTAGAGATTTTGTACCTTCTGC-TTTAGCTTTTTTGCTTAAA 538
Query 930 GGAGAAGGGGAGATTGTTAGAAACTTTCTCCTTCATACATTGCAG-TTGCAGAGCTGGGA 988
|||||||| || |||||||| |||||||| || |||||||||||| || ||||| |||||
Sbjct 539 GGAGAAGGTGATATTGTTAGGAACTTTCTTCTACATACATTGCAGCTT-CAGAGTTGGGA 597
Query 989 GAAAACAGTGGACTGTCACAGCCCTGGCCCGGGGC-TAATGCCAGCGAGTTTTAAAGTGA 1047
|||||| || || ||| |||| ||||| | |||| | ||||| |||||||||||||| |
Sbjct 598 GAAAACTGTAGATTGTTACAGTCCTGG-ACAGGGCTTGATGCCTGCGAGTTTTAAAGT-A 655
Query 1048 A-ATCTGCGCCACTTGAGGGAAATGATGGTTCATTTGAGGAGTTTTTAGATCCAGACTTT 1106
| | | | | | ||||| | | || | | || ||| |||| ||||| || |||
Sbjct 656 AGAACCGTGGCGCTTGA-TG--A-GAACACT-A-CGGAAGAGGTTTTGGATCCGGATTTT 709
Query 1107 GGTGGATCAGCCATTGGACGTGTTAGC-CCTGTTGACTCTGGTTTGTGGTGGATCATATT 1165
|||| |||||| ||||| |||||| || |||||||| ||||||||||||||||| ||||
Sbjct 710 GGTGAATCAGCTATTGGTCGTGTT-GCTCCTGTTGATTCTGGTTTGTGGTGGAT--TATT 766
Query 1166 -GC-TGAGAGCTTATGGAAAGCTCACGGGTGACTACACGTTGCAAGAGAGAATTGATGTT 1223
| |||| || ||||||||| | || || || | | | || |||||||| || ||||||
Sbjct 767 CTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCATTACAAGAGAGGATAGATGTT 826
Query 1224 CAAACAGGGATCAAG-TTGATAC-TCAAGCTT-TGTCTAGCCGACGGTTTTGACATGTTC 1280
|| |||||||| ||| || || | | || ||| ||| |||| || || ||||| |||||
Sbjct 827 CAGACAGGGATAAAGCTT-AT-CATGAA-CTTGTGTTTAGCAGATGGATTTGATATGTTT 883
Query 1281 CCGACTCTACTT-GTCACTGACGGATCATGTATGGTTGATCGAAGAATGGGGATTCATGG 1339
|| || || || |||||||| || || |||||| ||||||| | ||||| || |||||
Sbjct 884 CCAACACT-TTTGGTCACTGATGGTTCTTGTATGATTGATCGTCGTATGGGTATCCATGG 942
Query 1340 GCATCCACTTGAAATCCAAGCATTATTCTACTCCGCTCTCCGTTG-TGCTCGAGAGATGC 1398
||||| |||||||||||| | ||||||||||| || ||| | || | | || |||||||
Sbjct 943 CCATCCCCTTGAAATCCAATCGTTATTCTACTCAGCACTCAGATGCT-CCCGTGAGATGC 1001
Query 1399 TTAT-TGTGAATGATGGAACCAAG-AGCTTAGTTACTG-CAGTCAACAATCGCCTAAGTG 1455
|| | ||| ||||| | ||||| | ||| || | | || | |||||| | ||||||
Sbjct 1002 TT-TCTGTTAATGACAGCTCCAAGAATCTT-GTAAGAGCCA-TTAACAATAGGTTAAGTG 1058
Query 1456 CTTTATCATTCCATATCAGAGAGTACTATTGGGTGGATATTAAGAAA-ATCAACGAGATA 1514
|| | ||||| ||||||||||||||||| |||||||| | ||| ||| ||||| ||||||
Sbjct 1059 CTCTGTCATTTCATATCAGAGAGTACTACTGGGTGGACA-TAAAAAAGATCAATGAGATA 1117
Query 1515 TACCGTTACAACACAGAGGAGTATT-CAGCAGATGCAACAAACAAGTTTAACATATATCC 1573
||||||||||| ||||| ||||||| || | ||||| || |||||||| ||||| |||||
Sbjct 1118 TACCGTTACAAGACAGAAGAGTATTCCA-CGGATGCGACTAACAAGTTCAACATCTATCC 1176
Query 1574 AGAACAGATCCCTACTTGGCTTGTCGACTGGATTCCTGATAAAGGCGGTTACT-TCATAG 1632
|| || || ||| | ||||| | ||||||||||| || |||| || || | || | |
Sbjct 1177 TGAGCAAATTCCTCCATGGCTCATGGACTGGATTCCCGAGCAAGGTGGATA-TCTCCTCG 1235
Query 1633 GAAATCTCCAGCCTGCTCACATGGATTTCAGATTCTTCACACTTGGAAACCTCTGGGCCG 1692
| || || || ||||||||||||||||||||||||||||| || || ||| | ||| |
Sbjct 1236 GGAACCTACAACCTGCTCACATGGATTTCAGATTCTTCACGCTCGGGAACTTTTGGTCTA 1295
Query 1693 TTATTTCGTCTTTGGGAA-ACC-AAGAACAGAATGAAGG-AGTCAT-GA-CATTGATTGA 1747
|| ||||||| |||| | ||| ||| |||||||||| | | || || | || |||||
Sbjct 1296 TTGTTTCGTCCTTGGCTACACCCAAG--CAGAATGAAGCTA-T-ATTGAAC-TTAATTGA 1350
Query 1748 AGAGAAATGGGATGATCTTGTTGCAAACATGCCTCTCAAGATCTGTTTTCCGGC-TCTGG 1806
|| |||||||| ||| || ||| || |||||||| |||||||||| || || | | |
Sbjct 1351 AGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT-TAG 1409
Query 1807 AGAAAGATGAATGGCGAATAATCACCGGAT-CTGATCCAAAGAATACGCCTTGGTCATAT 1865
|| | ||||| ||||| ||||| || ||| | || |||||||| ||||||||||| |||
Sbjct 1410 AGTACGATGATTGGCGTATAATAACTGGAAGC-GACCCAAAGAACACGCCTTGGTCGTAT 1468
Query 1866 CACAATGGCGGATCCTGGCCAACTCTCCTCTGGCAGTTCACATTGGCTTGTATTAAGATG 1925
||||| | ||||||||||| || || || |||||||||||||| || ||||| ||||||
Sbjct 1469 CACAACAGTGGATCCTGGCCCACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGATG 1528
Query 1926 GGAA-AGCTAGAACTGGCGAAGAAAG-CAGTTGCTGTAGCAGAAAAAAGGCTAAAGGAAG 1983
|||| | | ||| || ||| | |||| | |||| || || || || || || || ||
Sbjct 1529 GGAAGACC-AGAGCTAGCGGA-AAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1586
Query 1984 AT-GAGTGGCCTGAGTATTATGACACGAAAAGC-GG-AAGGTTTGTGGGGAAA-CAATCA 2039
|| | |||||| |||||||| ||||| | | || || || | || ||| || ||
Sbjct 1587 ATCG-GTGGCCAGAGTATTACGACACCCGAT-CTGGCAAA-TTCATTGG-AAAGCAGTCC 1642
Query 2040 AGGCTTTACCAGACTTGGACCA-TAGCGGGTTTCTTGGCAGCTAAGAAAC-TAATAGAGC 2097
|||||||||| || ||||| | | || || |||||| | |||| | | | |||
Sbjct 1643 CGGCTTTACCAAACATGGAC-AGTCGCTGGATTCTTGACTTCTAA-ACTCCTCCTAGCT- 1699
Query 2098 AA-CCTGAGAAAGCATCACTCTTGTTCTGGGAAGAGGACTATCAGCTGCTCGAGA-CTTG 2155
|| || |||| |||||||| || ||||||||||| || ||| | || || || | || |
Sbjct 1700 AATCCAGAGATGGCATCACTGTTATTCTGGGAAGAAGATTATGAACTTCTGGATATCT-G 1758
Query 2156 TGTCTGTGGCCTCAGTAAAA 2175
|| |||||| ||| | ||||
Sbjct 1759 TGCCTGTGGTCTCCG-AAAA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92673566085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5