BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06520.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340841 jgi|Araly1|340841|fgenesh1_pg.C_scaffold_3000604 2080 0.0
> Ahg340841 jgi|Araly1|340841|fgenesh1_pg.C_scaffold_3000604
Length=1380
Score = 2080 bits (1126), Expect = 0.0
Identities = 1316/1404 (94%), Gaps = 27/1404 (2%)
Strand=Plus/Plus
Query 1 ATGACGAGCGATCGATTTTGGCGCGGCGGTGACCGCGTTGAGGTGGAACGACTAGTTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGACGAGCGATCGATTTTGGCGCGGCGGTGACCGCGTTGAGGTGGAACGACTTGTTTCC 60
Query 61 GGCGCGACGGCATATTTTCCGGCGAGTGTTGTTAGCGCGCCTTCGGTGAGAAAGAAACTC 120
||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCGCGACGGCGTATTTTCCGGCGACTGTGGTTAGCGCGCCTTCGGTGAGAAAGAAACTC 120
Query 121 GTTTGGGTGGAGCATGAATCCCTAACTGTTGGAGGTTCCGTTTCCGTACGTATGAAGGAG 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTTTGGGTGGAGCATGAATCCCTAACTGTTGGAGGTTCCGTTTCCATACGTATGAAGGAG 180
Query 181 TACGTCACTCCCACGCGCCTCCGTCCATCTCCACCGCGTGAACTCAACAGACGGTTCAAA 240
||||| | ||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TACGTTATTCCCAAGCGCCTCCGTCCATCTCCGCCGCGTGAGCTCAACAGACGGTTCAAA 240
Query 241 GCTGACGATGAGGTCGATGTCTTCAGAGATAGCGAAGGTTGCTGGGTTAGAGGCAATGTT 300
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGACGATGAGGTCGAGGTCTTCAGAGATAGCGAAGGTTGCTGGGTTAGAGGCAATGTT 300
Query 301 ACGACCGTACTTGAAGATTCAAGGTACATTGTGGAGTTTAAAGGGGAAAATCGTCCAGAA 360
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACGACAGTACTTGAAGAGTCAAGGTACATTGTGGAGTTTAAAGGGGGAAATCGTCCAGAA 360
Query 361 ATAGAGGTTGATCAGTTCAATTTGAGGCTTCATCGTGAATGGCTAGATGGTGGGTGGGTT 420
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 361 ATAGAGGTTGATCAGTTCGATTTGAGGCTTCATCGTGAATGGCAAGATGGTGCGTGGGTT 420
Query 421 CCTTCTCTTCTCCAACAGAGCAATTTCTCGGAATCGACAGCCCAAAGAATTAAACTGAAG 480
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 421 CCTTCTCTTCTCCAACAGAGCAATTTCTTGGAATCGAAAGCCCAAAGTATTAAACTGAAG 480
Query 481 ATAAAAATCAAGAGAAGAGATCAATATGAGAAGGGAGCTCTTGTCGAAGTCAGAAGTGAA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATAAAAATCAAGAGAAGAGATCAATATGAGAAGGGAGCTCTTGTGGAAGTCAGAAGTGAA 540
Query 541 GAAAAAGCTTACAAGGGTTCTTGGTATTGTGCTCGTATACTTTGTTTATTAGGTGATGAT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GAAAAAGCTTACAAGGGTTCTTGGTATTGTGCACGTATACTTTGTTTATTAGGTGATGAT 600
Query 601 AAGTACATTGTTGAACACTTGAAATTTAGTAGAGATGATGGTGAGTCGATCCCTCTGAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 AAGTACATTGTTGAACACTTGAAATTTAGTAGAGATGATGGTGAGTCGATCCCTCTGCGA 660
Query 661 GATGTGGTAGAAGCCAAGGACATAAGACCAGTTCCTCCTTCAGAACTCTC-GCCTGTTGT 719
||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||
Sbjct 661 GATGTGGTAGAAGCCAATAACATGAGACCAGTTCCTCCTTCAGAACT-TCCGCCTGTTGT 719
Query 720 GTGCTATGAACCAGGGGTTATAGTTGATGCTTGGTTCAACAAACGGTGGTGGACCAGTAG 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 720 GTGCTATGAACCAGGGGTTATAGTTGATGCTTGGTTCAACAAGCGGTGGTGGATCGGTAG 779
Query 780 GGTTTCCAAAGTCCTAGGAGGAGGTTCTAATAAGTATTCAGTTTTTATCATCTCAACTGG 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 780 GGTTTCCAAAGTCCTAGGAGGAGGTTCTAA---GTATTCAGTTTTTATCATCTCAACAGG 836
Query 840 TGAAGAAACGACAATCTTAAATTTCAACTTAAGGCCCCACAAAGATTGGATCAATGGACA 899
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGAAGAACCGACAATCCTAAATTTCAACTTAAGGCCCCACAAAGATTGGATCAATGGACA 896
Query 900 ATGGGTCATTCCTTCCAAGGTATTGACTGATGTGCCGGAAGAATGTTACAAACCTCCATT 959
|||||| | ||||||||||| | || ||| | | |||||||||||||
Sbjct 897 ATGGGTTAATCCTTCCAAGGAA--GA---ATG--C--------T---ACAAACCTCCATT 938
Query 960 GAAGAAGCTGAAATCTTGTGAGAGAGCAGAGAAGGTGTTTAACAATGGAATGGA-GGTGG 1018
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 939 GAAGAAGCTGAAATCTTGTGAGAGAGCAGAGAAGGTATTTAACAATGGAATG-ATGGTGG 997
Query 1019 AAGTTAGAAGCGACGAACCAGGTTACGAAGCCTCATGGTTCTCTGCAAAGATCGTAAGTT 1078
|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 998 AAGTTAGAAGCGACGAACGAGGTTACGAAGGCTCATGGTTCTCTGCGAAGATCGTAAGTT 1057
Query 1079 ACTT-GGGCGAAAACAGATACACAGTGGAGTATCAAACACTAAAAACAGACGATGAAAGA 1137
|||| ||| |||| ||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1058 ACTTAGGGGGAAA-CAGATACACAGTGGAGTATCAAACACTGAAAACAGATGATGAAGGA 1116
Query 1138 GAGTTGTTGAAGGAAGAAGCAAGAGGTTCAGATATAAGACCTCCTCCTCCTCCACTGATT 1197
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1117 GAGTTGTTGAAGGAAGAAGCAAGAGGTTCAGATATAAGACCTATTCCTCCTCCACTGATT 1176
Query 1198 CCAAAGGGGTATCGATATGAATTGTATGAACTTGTGGATGCTTGGTACAATGAAGGATGG 1257
|||| || |||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 1177 CCAACGGAGTATCGATATGAATCGTGTGAAGATGTGGATGCTTGGTACAATGAAGGATGG 1236
Query 1258 TGGTCTGGTCGAGTATATAAGATAAACAACAACAAAACGAGATATGGTGTCTACTTCCAA 1317
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||
Sbjct 1237 TGGTCTGGTCGAGTATATACGATAAACAACAACTACACGAGATATGGTGTCTACTTCAAA 1296
Query 1318 ACGACTGATGAGAGTTTGGAGTTTGCTTACAATGACCTTAGGCCTTGCCAAGTGTGGAGA 1377
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1297 ACGACTGATGAGAGATTGGAGTTTGCTTACAATCATCTTAGGCCTTGCCAAGTGTGGAGA 1356
Query 1378 AACGGAAAATGGAGTCGTGTATAA 1401
||||||||||||||||||| ||||
Sbjct 1357 AACGGAAAATGGAGTCGTGCATAA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5