BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06530.2
Length=6917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477959 jgi|Araly1|477959|fgenesh2_kg.3__660__AT3G06530.1 2652 0.0
Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025 148 4e-34
> Ahg477959 jgi|Araly1|477959|fgenesh2_kg.3__660__AT3G06530.1
Length=5817
Score = 2652 bits (1436), Expect = 0.0
Identities = 1724/1860 (93%), Gaps = 32/1860 (2%)
Strand=Plus/Plus
Query 5010 GGGTTGTTACTAGCTTGCTTCAGCAGCAGACAGATTATAATGGGACGAAAAAGGTACTTG 5069
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 3980 GGGTTGTTACTAGCTTGCTTCAGCAGCAGTCGGATCGTAATGGGACGAAAAAGGTACTTG 4039
Query 5070 GACTTATAAGTGAGAGAGCTAAGGACACCTCATCTTCTAAAATGAAACACAAGAGAAAGA 5129
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 4040 GACTTATAAGTGAGAGAGCTAAGGACACCTCTTCTTCTAAACTGAAACACAAGAGGAAGA 4099
Query 5130 TTTCCAATCAAAAAGGAAGAAATTCTTGGTTGAACTTGGATGAGGTTGCTGTTGATTCTT 5189
||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 4100 TTTCCAATCAAAAAGCAAGAAATCCTTGGTTGCATTTGGATGAGGTTGCTGTTGATTCTT 4159
Query 5190 TCGGGAAGATGTGTGAGGAGATTGTCCATCTGATTAATGCGACAGATGATGAGTCAGGTG 5249
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 4160 TCGGGAAGATGTGTGAGGAGATTGTCCATCTAATTGATGAGACAGATGATGAGTCAGGTG 4219
Query 5250 TTCCAG-TAAAACGAGCTGCCATTTCTACACTGGAAGTTTTGGCTGGCAGGTTTCCATCT 5308
|||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 4220 TTCCAGCT-AAACGAGCGGCCATTTCTACACTGGAAGTTTTGGCTGGCAGGTTTCCGTCT 4278
Query 5309 GGTCATCCAATCTTCAGGAAATGCCTTGCAGCTGTTGCAGAATGCATCAGTTCAAAGAAT 5368
|| || ||||| ||||| |||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 4279 GGGCACCCAATATTCAGCAAATGCCTTGCATCTGTTGCAGAAGGCATCAGCTCAAAGAAT 4338
Query 5369 TTGGGAGTCTCGTCCAGCTGTCTTCGAACAACTGGTGCACTGATCAATGTTCTTGGACCA 5428
|||||| | ||||| || |||||||| |||||||||||||||||||||||| |||||||
Sbjct 4339 TTGGGAATTTCGTCAAGTTGTCTTCGCACAACTGGTGCACTGATCAATGTTATTGGACCT 4398
Query 5429 AAGGCGCTCATTGAACTTCCATGCATAATGAAGAATTTGGTAAAACAGTCGCTTGAAGTA 5488
|||||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 4399 AAGGCGCTTGTTGAACTTCCACGCATAATGAAGAATTTGGTAAAACAATCGAGTGAAGTA 4458
Query 5489 TCATTTGCATCCCAGAGTGGTCGAAACGCAACAGCTGAAGAACAGTTGCTTATGCTGTCT 5548
|||| ||||||| |||||| | ||||| ||||||||||||| ||||| ||||||||||||
Sbjct 4459 TCATCTGCATCCAAGAGTGCTGGAAACACAACAGCTGAAGAGCAGTTACTTATGCTGTCT 4518
Query 5549 GTTCTAGTCACTTTGGAAGCAGTGATTGATAAACTTGGAGGTTTCCTAAATCCTCATCTT 5608
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4519 GTTCTAGTCACTTTGGAAGCAGTGATTGATAAACTTGGAGGTTTCCTTAATCCTCATCTT 4578
Query 5609 GGAGATATTATGAAAATCATGGTGCTACATCCTGAATATGTATCTGACTTCGACAAGAAT 5668
||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 4579 GGAGATATTATGAAAGTCATGGTGCTGCATCCTGAGTATGTTTCTGACTTCGACAAGAAT 4638
Query 5669 CTCAAGTCCAAAGCCAATGCCATTAGGAGGCTCCTTACTGATAAAATACCTGTTCGTCTC 5728
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 4639 CTCAAGTCCAAAGCCAATACAATTAGGAGGCTCCTTACTGATAAGATACCTGTTCGTCTT 4698
Query 5729 ACTCTGCAACCACTTCTACGAATATACAATGAGGCTGTTAGTTCTGGGAATGCAAGCTTG 5788
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4699 ACTCTGCAACCTCTTCTACGAATATACGATGAGGCTGTTAGTTCTGGGAATGCAAGCTTG 4758
Query 5789 GTGATTGCTTTTAATATGTTAGAAGATCTGGTTGTGAAAATGGATAGATCATCTATCGTT 5848
|||||||||||| ||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 4759 GTGATTGCTTTTGATATGTTAGAAAATCTAGTCGTGAAAATGGATAGATCATCTATCGTT 4818
Query 5849 AGCAGCCATGGGAAGATTTTTGATCAGTGCTTAGTTGCCCTTGATATTCGACGTCTAAAT 5908
|||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| ||||
Sbjct 4819 AGCAACCATGGAAAGATTTTTGATCAATGCTTAGTCGCCCTCGATATTCGACGTCAAAAT 4878
Query 5909 CCAGCAGCAATTCAGAACATTGATGATGCTGAGAGAAGTGTAACTAGCGCAATGGTTGCT 5968
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 4879 CCAGCAGCTATTCAGAACATTGATGAAGCTGAGAGAAGTGTAACTAACGCAATGGTTGCT 4938
Query 5969 CTCACAAAGAAGCTAACGGAGTCCGAGTTCAGACCTCTCTTTATTAGGAGTATTGATTGG 6028
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4939 CTCACAAAGAAGCTAACTGAGTCCGAGTTCAGACCTCTCTTTATTAGGAGTATTGATTGG 4998
Query 6029 GCAGAGTCAGATG-TTGTTGACGGATCAGGGAGTGAAAACAAGAGCATCGACCGAGCTAT 6087
|||||||| || | |||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 4999 GCAGAGTCCGA-GATTGTAGACGGATCCGGGAGTGAAAACAAGAACATCGACCGAGCTAT 5057
Query 6088 ATCTTTCTATGGTCTGGTGGATCGACTCTGTGAGAGTCACAGGTCCATCTTTGTACCGTA 6147
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 5058 ATCTTTCTATGGTCTGGTGAATAGACTCTGTGAGAGTCACAGGTCCATCTTTGTACCATA 5117
Query 6148 TTTCAAATACGTGCTTGATGGTATTGTAGCACATCTCACCACTGCTGAAGCTTCTGTTTC 6207
||||||||||||||| |||||||||||| |||||||||| | ||| |||||||| |||||
Sbjct 5118 TTTCAAATACGTGCTCGATGGTATTGTATCACATCTCACTAGTGCCGAAGCTTCGGTTTC 5177
Query 6208 AACTAGGAAGAAAAAGAAAGCCAAAATTCAGCAAACTTCTGACTCTATA-CAACCAAAAA 6266
||| |||||||||||||| |||||||||||| |||| |||||| ||||| | ||||||||
Sbjct 5178 AACCAGGAAGAAAAAGAAGGCCAAAATTCAGGAAACGTCTGACACTATATC-ACCAAAAA 5236
Query 6267 GCTGGCATCTTAGGGCATTAGTTCTTTCTTGCTTGAAGAATTGTTTTCTGCATGATACCG 6326
||||||||||||||||| | || |||||| |||||||||||||||||||||||||||||
Sbjct 5237 GCTGGCATCTTAGGGCACTGGTGATTTCTTCCTTGAAGAATTGTTTTCTGCATGATACCG 5296
Query 6327 GCAGCTTGAAGTTTCTGGATACAAATAACTTCCAGGTGCTACTTAAGCCTATTGTATCAC 6386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5297 GCAGCTTGAAGTTTCTGGATACAAATAACTTCCAGGTGCTACTTAAGCCTATTGTATCAC 5356
Query 6387 AGCTTGTTGTTGAACCTCCATCTTCTTTAAAGGAGCACCCACATGTACCATCTGTGGATG 6446
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 5357 AGCTTGTTGTTGAACCTCCATCTTCTTTAAAGGAGCATAAACATGTACCATCTGTGGATG 5416
Query 6447 AGGTTGATGATTTATTGGTTTCATGCATCGGTCAAATGGCAGTAGCCTCAGGCTCTGACC 6506
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5417 AGGTTGACGAATTATTGGTTTCATGCATCGGTCAAATGGCAGTAGCCTCAGGCTCTGACC 5476
Query 6507 TCCTCTGGAAACCGCTGAACCACGAGGTGCTAATGCAAACGAGGAGTGAGAGTGTACGGT 6566
|||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 5477 TCCTCTGGAAACCGCTGAACCATGAGGTGCTAATGCAAACGAGGAGTGAGAATCTACGGT 5536
Query 6567 CAAGGATGTTGAGTTTGAGAAGTGTGAAACAGATGCTGGATAATCTGAAAGAAGAGTATC 6626
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5537 CAAGGATATTGAGTTTGAGAAGTGTGAAACAGATGCTGGATAATCTGAAAGAAGAGTATC 5596
Query 6627 TTGTGTTGCTTGCTGAAACCATTCCATTCTT-GGCTGAGCTACTAGAAGACGTCGAGCTA 6685
||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 5597 TTGTGTTGCTTGCTGAAACCATTCCATTCTTAGG-TGAGCTACTCGAAGACGTCGAGCTA 5655
Query 6686 TCTGTTAAATCTTTGGCTCAAGATATTATCAAACAAATGGAAGAGATGAGCGGTGAAAGT 6745
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 5656 TCTGTTAAATCTTTGGCTCAAGATATTATCAAACAGATGGAAGAGATGAGCGGTGAAAGT 5715
Query 6746 CTGGCGGAATACCTCTGAAACTCGTTTGAGTGCTATGCAACCGTT-AGTTCCCAATTTTG 6804
||| || |||||||||||||| | | | | ||| | ||||||||||||
Sbjct 5716 CTGACGCAATACCTCTGAAAC-------A-----A--C--C-GTTGA-TTCCCAATTTTG 5757
Query 6805 ATTCttttttt-GTCT-GTC--G-TAGTAAATAACTAGATATGAAATACAACTTTCTGAA 6859
||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 5758 ATTCTTTTTTTTGTCTTGTCTTGGTAGTAAATAACTAGATATGAAATACAACTTTCTGAA 5817
Score = 2292 bits (1241), Expect = 0.0
Identities = 1534/1673 (92%), Gaps = 29/1673 (2%)
Strand=Plus/Plus
Query 2833 AGATGTTCCTCCTCTTGTCCAAATTGAAAGTCTCAGATGTTTTTCGTATCTTTGCTCTAG 2892
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 2334 AGATGTTCCTCCTGGTGTCCAAATTGAAAGTCTCAAATGTTTTTCGTATCTTTGCTCTTG 2393
Query 2893 CGGGAATAATGAATGGTTGATTC-AAGTTTTTTCAAGCTTTCCTGTACTTTTGGTTCCCA 2951
|||||||||||||||||||| || || |||| ||||||||||||||||||||||||||||
Sbjct 2394 CGGGAATAATGAATGGTTGAATCGAA-TTTTCTCAAGCTTTCCTGTACTTTTGGTTCCCA 2452
Query 2952 TGTCAAGTGATAATCAGGACGTTAAAGCAGCTG-CCATTAATTGTATCGAGGCACTCTTC 3010
|||| |||| |||||| | || | | | | | || |||| ||| | | | | |
Sbjct 2453 TGTCGAGTGCTAATCA-G--GTGACACCTGAAGACC-TTAA-AGTA--GCTG--C-CATG 2502
Query 3011 AACCTTCGGTGTCGTGTCGAATCTAGCaaaaaaaaTG-GGAGTGCTGCAATCTACGGTAG 3069
|| || || | | | | | ||| | || | ||||||||||||||| |||||
Sbjct 2503 AA--TT--GTATTGAGGC-ACTCT-TC-AATCTTCGGTGGAGTGCTGCAATCTGTGGTAG 2555
Query 3070 TTCTTTTGATGAACTTTTGGGAATGATCGTGCAACAAAGGAGGCTTATATTGTCAGACAA 3129
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2556 TTCTTTTGATGAACTTTTGGGAATGATCGTGCAACAAAGGAGGCTTATATTGTCGGACAA 2615
Query 3130 TAAGTTTTTCGCATCGTACTTGACATCGTTGCTCAGTTCAACCACTAATGACCTTCTAGT 3189
||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2616 TAAGTTTCTCCCATCCTACTTGACATCGTTGCTCAGTTCAACCAGTAATGACCTTCTAGT 2675
Query 3190 GCCAGTTGGCCTGCAAAAAAGGTTTGATCAATCCACAAAAGAAAACATTCTTTCGGTCAT 3249
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2676 GCCAGTTGACCTGCAAAAAAGGTTTGATCAATCCACAAAAGAAAACATTCTTTCGGTCAT 2735
Query 3250 TTTATTGTGTGCGGAAGACCTACCTGCTTATGGGAAGCTAAGAGTCCTATCTTTGCTAAA 3309
||||||||||| | |||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 2736 TTTATTGTGTGTGAAAGATTTACCAGCTTATGGGAAGCTAAGGGTCCTATCTTTGCTAAA 2795
Query 3310 AGATCTGGGCATCATGCTTATGCGTGATGAAATTGTTAAGTTATTGTCTCAACTTCTTGA 3369
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2796 AGATCTGGGCATCATGCTCCTGCGTGATGAAATTGTTAAGTTATTGTCTCAACTTCTCGA 2855
Query 3370 TAAACGTAGTCAATACTAC-TATAAGCTGGACAAAACTTC-CCAGCCATTATCAGACACT 3427
||||||||||||| ||||| || || ||||||||||| || ||||||| | |||||||||
Sbjct 2856 TAAACGTAGTCAAGACTACTTA-AAACTGGACAAAAC-TCTCCAGCCAATGTCAGACACT 2913
Query 3428 GAGGTCGATTTATTATGCCTTCTTCTGGAGTGCTCCATGATGCGAACATCATCGTTTAAA 3487
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2914 GAGGTCGATTTATTATGCCTTCTTCTGGAGTGCTCCATGATGCGTTCAGCATCGTTTAAA 2973
Query 3488 GGGCAGTCTCTTGATGATCATATACTGAGCGCATTGAATGTGGATTGTATGGCTTCAGAA 3547
||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2974 GGGCAGTCTCTGGATGATTATATACTGAGCGCATTGAAAGTGGATTGTATGGCATCAGAA 3033
Query 3548 CGTCCTGCTGTTATTTCTCCTTGTCTTACCATTTTGGAGAAGCTAAGCAATCGATTTTAT 3607
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3034 CGTTCTGCTATTATTTCTCCTTGTCTTACCATTTTGGAGAAGCTAAGCAATCAATTTTAT 3093
Query 3608 GATGAACTGCAGACTGATGTTCAGATTCGTTTCTTCCACAAACTTGTGTCTATGTTTCGA 3667
| || |||| ||| ||| |||||||||||||||||||| | ||| |||||||||||||||
Sbjct 3094 GTTGGACTGAAGAGTGAGGTTCAGATTCGTTTCTTCCATATACTGGTGTCTATGTTTCGA 3153
Query 3668 AGTTCAAATGGCAGTATACAAAATGGTGCCAAAGAAGCTGTCTTACGCCTGAAGCTTTCT 3727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3154 AGTTCAAATGGCAGTATACAAAATGGTGCCAAAGAAGCTGTCTTACGCCTGAAGATTTCT 3213
Query 3728 TCTTCAACGGTGGTCCTTGCTCTTGATCGTATCACTCAGCAGGATACTCTTGTTATTGGT 3787
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 3214 TCTTCAACGGTGGTCCATGCTCTTGATCATATCATTCAGCAGGATACTCTTGTTATTGGT 3273
Query 3788 TCTTTGAGCAAGAAGAAGAAACAGAAGAAAAATTCAAAGTCATGTCCAGAAGAAGACATA 3847
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||
Sbjct 3274 TCTTTGAGCAAGAAGAAGAAACAGAAGAAAAGTTCAAAGTCATCTCCAGAAGAAGGCGTA 3333
Query 3848 AATAGCGAGGAATTTCGAAGTGGGGAAAAGGCTCTCTCTTTCATTGCCTCATTACTTGAC 3907
||||||| |||||||| ||| || |||||||||||||||||||||||| | |||||||||
Sbjct 3334 AATAGCGGGGAATTTCTAAGCGGAGAAAAGGCTCTCTCTTTCATTGCCGCGTTACTTGAC 3393
Query 3908 ATGCTGCTTCTCAAGAAAGATCTAACTCACAGGGAGTCCCTCATAAGGCCCTTGTTTAAG 3967
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 3394 ATGCTGCTTCTAAAGAAAGATCTAGCTCACAGGGAGTCCCTCGTAAGGCCCTTGTTTAAG 3453
Query 3968 CTCCTACAAAGATCCATGTCTAAAGAATGGGTGAAAATTGCTTTTTCAATTGAGGAAACG 4027
|||||| ||||||||||| ||||||||||||| |||||||||| ||| ||||||||||
Sbjct 3454 CTCCTAGAAAGATCCATGCCTAAAGAATGGGTAAAAATTGCTTCTTCCGTTGAGGAAACA 3513
Query 4028 TCACTCCAGCCTCCACAGGATGTTCGTGAAACAACTCCTACCTTTATTTCTTCCATCCAA 4087
||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 3514 TCAGTCCAACCTCCACAGGATGTTCGTGAAACAACTCCTGCCTCTATTTCTTCCATCCAA 3573
Query 4088 CAGAC-TCTGCTCTTAATCCTGAAAGATATTTTTGATTCTCTGAATATGAATCCTTTGAA 4146
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3574 CAGACAT-TGCTCTTAATCCTGAAAGATATTTTTGATTCTCTAAATATGAATCCTTTGAA 3632
Query 4147 GGCTGAAGTAGCAAATGAAATCAATGTCAAAATGCTGGTTGAGTTGGCTCATTCATCAAA 4206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3633 GGCTGAAATAGCAAATGAAATCAATGTCAAAATGCTGGTTGAGTTGGCTCATTCATCAAA 3692
Query 4207 TGATGGAGTCACACGGAACCATATCTTCTCCTTGTTCACTGCAATTGTTAAATTTGTCCC 4266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3693 TGATGGAGTCACACGGAACCATATCTTCTCCTTGTTCACTGCAATTGTTAAATTTGTCCC 3752
Query 4267 TGATA-AGGTTTTGGACCATATTATCAGCATACTTACACTTGTTGGTGAATCAACTGTGA 4325
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3753 TGATAGAG-TTTTGGACCATATTATCAGCATACTTACACTTGTTGGTGAATCAACTGTGA 3811
Query 4326 CACAGATTGATAGTCACTCGAAGTCTATCTTTGAGGGGTTTATATCAATGGTCATTCCAT 4385
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3812 CACAGATTGATAGCCACTCGAAGTCTATCTTTGAGGGGTTTATATCAGTGGTCATTCCAT 3871
Query 4386 TTTGGCTGTCTAAGACTAAGAGTGAGGAGCAGTTGTTACAGATTTTTGTGAAAGTCTTAC 4445
|||||||||| |||||||||||||||||||||||| | | ||||||||||||||| ||||
Sbjct 3872 TTTGGCTGTCCAAGACTAAGAGTGAGGAGCAGTTGCTGCTGATTTTTGTGAAAGTGTTAC 3931
Query 4446 CTGATATTGTTGAGCATAGAAGGCGTTCAATTGTAGCTTACTTGCTGGGAGTT 4498
||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 3932 CTGATATTGTTCAGCATAGAAGGCGTTCAATTGTAGCTTACTTACTGGGGGTT 3984
Score = 1757 bits (951), Expect = 0.0
Identities = 1084/1147 (95%), Gaps = 14/1147 (1%)
Strand=Plus/Plus
Query 1241 AGTTCGTCTGATGATAAATGCTGCGAAGTTTTAGCTTCAATAATTGAGACTGTTCCCGTA 1300
||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 988 AGTTCGTCTGATGATCAATGCTGCGAAGCTTTAGCTTCAATAATTGAGGCTGTTCCAGTA 1047
Query 1301 AGCAATTTGGTTGATCATTTGATCTCCAAGGTTTTCTCTTTATGTATGACACAATACCAG 1360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AACAATTTGGTTGATCATTTGATCTCCAAGGTTTTCTCTTTATGTATGACACAATACCAG 1107
Query 1361 AAGAACAGTGATTTTAGATCTTCTACATCTGTTGTAGGAAGCTGGGCCAAGAAATTTCTG 1420
||||||||||||||||||||||||||||| || || ||||||||||||||| |||||
Sbjct 1108 AAGAACAGTGATTTTAGATCTTCTACATC---TG--GG-AGCTGGGCCAAGAAAATTCTG 1161
Query 1421 GTTGTTGTAAGCAAGAAGTATCCTGCTGAACTACGTGCCGCAGTTCCTAAATTTTTAGAG 1480
||||||||||||||||||||||||| ||||||||||| || ||| | |||||| |||||
Sbjct 1162 GTTGTTGTAAGCAAGAAGTATCCTGTTGAACTACGTGAAGCGGTTTCGAAATTTCTAGAG 1221
Query 1481 GCTACTGAAGTTCAGTCGAAGAAAGAGGATTTAAAGCTAGAGATGTTGTCTTGTATGCTG 1540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GCTACTGAAGGTCAGTCGAAGAAAGAGGATTTAAAGCTAGAGATGTTGTCTTGTATGCTG 1281
Query 1541 GATGGGAATTCAGACATGTCTC-ACCCGTTTGTGGATTCAAAATTGTGGTTCCGGCTCCA 1599
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1282 GATGGGAATTCAGACATGTC-CAATCCGTTTGTGGATTCAAAATTGTGGTTCCGGCTCCA 1340
Query 1600 CCATCCCAGGGCTGCTGTACGTTGTGCCGCGCTTTCTAGTCTAAATGGTGTTCTCAAGGA 1659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1341 CCATCCCAGGGCTGCTGTACGTTGTGCCGCGCTGTCTAGTCTAAATGGTGTTCTCAAGGA 1400
Query 1660 TGATAGCTCTAAAGCAGAGAACCTTGTCACAATTCAGGATGCTATACTGCGTCAGCTTTG 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGATAGCTCTAAAGCAGAGAACCTTGTCACAATTCAGGATGCTATACTGCGTCAGCTTTG 1460
Query 1720 GGATGATGATCTGGCTGTTGTTCAGGCTGCCCTCTC-TTTCGATAAGTTGCCCAATATAA 1778
||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1461 GGATGATGATCTGGCTGTTGTTCAGGCTGCCCTGTCCTTT-GATAAGTTGCCCAATATAG 1519
Query 1779 TAACCTCTTCTGGTCTTCTGGATGCTTTGCTTCATGTGGTGAAACGATGTGTTGGCATTC 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TAACCTCTTCTGGTCTTCTGGATGCTTTGCTTCATGTGGTGAAACGATGTGTTGGCATTC 1579
Query 1839 TCGTATCAGGAGTATCACATAATGTTCAACTGGCAGTTGATGTTGTTGCTTTGTCTCTTA 1898
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1580 TCCTATCAGGAGTATCACATAATGTTCAACTGGCAAATGATGTTGTTGCTTTGTCTCTTA 1639
Query 1899 AAATTGCTGTCTCAAGCTTCGGTAATCAAACAGACTCTACTGAGAAAGTTACCTCTGCAA 1958
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct 1640 AAATTGCTGTCTCAAGCTTCTCTAATCAAGCAGACTCTACTGAGAAAGTTACCTCCGCAA 1699
Query 1959 TGTTCCCATTTCTCTTAATTCAGCCGAAGACGTGGAATTTAAATCTACTTGTGCTAAAGT 2018
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1700 TGTTCCCATTTCTCTTAATTCAACCGAAGACGTGGAATTTAAATCTACATGTGCTAAAGT 1759
Query 2019 TGGGAAAGGATGTTAACTGGCCACTTTTCAAGAATCTTGCTGCTGATGATG-GAATGAAA 2077
|||| |||||||||||||||||||||||||||||||||| | |||||| || || |||||
Sbjct 1760 TGGGGAAGGATGTTAACTGGCCACTTTTCAAGAATCTTGGTACTGATGCTGAGA-TGAAA 1818
Query 2078 AAGCTCCCCGATATCATGTCTACAAACTTATCCTCAATTAGCATGGATATTATTAACGAT 2137
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 1819 AAGCTCCCAGATATCATGTCTACAAACTTATCCTCGATTAGCATGGATATTATAAACAAT 1878
Query 2138 TTGGGAGAAGCACTCTCCTTGGATCCTGATGAGCGTAGGATTGAGCTTATTGAGAGAGCG 2197
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1879 TTGGGGGAAGCACTTTCCTTGGATCCTGATGAGCGTAGGATTGAGCTTATTGAGAGTGCC 1938
Query 2198 TGCAACTATAAGCTCTCTGAAGTTTTGGAAACATGCAGCAATATCAAAT-GTTCAGAACA 2256
||||||| ||||||||||||||| ||| ||||||||||||||||||||| | |||||||
Sbjct 1939 TGCAACTTTAAGCTCTCTGAAGTCTTGAAAACATGCAGCAATATCAAATTGA-CAGAACA 1997
Query 2257 GGATCGTAACAAGTTGCAGAAGGGACTACTGATCCGTGAAAGTGTGTCCGCATTGAACAT 2316
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1998 GGAACGTAACAAGTTGCAGAAGGGACTACTGATCCGTGAAAGTGTGTCCACATTGAACAT 2057
Query 2317 AGATGTCATTAACAAGCTGGTGGAAGCATTTATGATGCACCCTGCTGATTATATTCAGTG 2376
||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2058 GGATATCATTAACAAGCTGATGGACGCATTTATGATGCACCCTGCTGATTATATTCAGTG 2117
Query 2377 GCTTACT 2383
|||||||
Sbjct 2118 GCTTACT 2124
Score = 1506 bits (815), Expect = 0.0
Identities = 931/989 (94%), Gaps = 0/989 (0%)
Strand=Plus/Plus
Query 164 ATGAGTTCTTCAATAGTGTCACAGTTACAGGCTCTCAAGTCAGTGTTACAAGCCGATACA 223
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAGTTCTTCTATAGTGTCACAGTTACAGGCTCTCAAGTCAGTGTTAAAAGCCGATACA 60
Query 224 GAGCCTTCCAAGAGACCTTTCACACGCCCTTCGATTCTCTTCAGTCCTAAAGAAGCAGCT 283
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGCCTTCGAAGAGACCCTTCACACGCCCTTCAATTCTCTTCAGTCCTAAAGAAGCAGCT 120
Query 284 GATTTCGATATCGAATCAATTTACGAGCTCGGGCTCAAAGGTCTAGAAGTACTTGGAAAC 343
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTCGATATTGAATCCATCTACGAGCTCGGGCTCAAAGGTCTAGAAGTACTTGGAAAC 180
Query 344 AAAGATGAGAGGTTTAAAAATTACATGAACGACTTGTTTAGTCATAAAAGTAAAGAAATT 403
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 181 AAAGATGAGAGGTTTAAGAATTACATGAACGACTTGTTTAGTCATAAAAGTAGAGAAGTT 240
Query 404 GATAGGGAATTGCTGGGTAAAGAAGAAAATGCTCGGATTGATTCATCAATCAGTTCGTAT 463
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GATAGGGAATTGCTGGGTAAAGAAGAAAATGCTCGGATTGATGCATCAATCAGTTCGTAT 300
Query 464 CTACGTTTACTCTCTGGTTATCTTCAATTTCGTGCTTCCTTGGAGACCCTTGAGTATCTC 523
|||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 301 CTACGTTTACTCTCGGGCTATCTTCAATTCCGTGCTTCTTTGGAGACCCTTGAGTATCTT 360
Query 524 ATACGACGATACAAGATTCATATATACAACTTGGAAGATGTGGTTCTATGCGCCTTGCCA 583
|||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 361 ATACGAAGATACAAGATTCATATATACAACGTAGAAGATGTGGTTCTATGCGCTTTGCCA 420
Query 584 TACCATGACACACATGCCTTTGTCCGCATTGTTCAACTGCTTTCTACTGGAAATTCCAAG 643
||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||
Sbjct 421 TACCACGACACACATGCCTTTGTCCGCATTGTTCAGCTACTTTCAACTGGCAATAGCAAG 480
Query 644 TGGAAATTTCTGGATGGTGTTAAAAATTCAGGTGCTCCACCTCCTAGATCGGTTATCGTT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGAAATTTCTGGATGGTGTTAAAAATTCAGGTGCTCCACCTCCTAGATCGGTTATCGTT 540
Query 704 CAGCAATGTATACGTGATAAACAAGTTTTGGAGGCCTTGTGTGACTATGCATCTCGTACT 763
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct 541 CAGCAATGTATACGTGATCTGGAAGTTTTGGAGACCTTGTGTGACTATGCATCTCGGACT 600
Query 764 AAGAAGTATCAGCCTTCAAAACCTGTGGTTAGCTTCTCCACCGCAGTTGTTGTTGGGGTG 823
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 AAGAAGTATCAGCCTTCAAAACCTGTGGTTAGCTTCTCCACAGCAGTTGTTGTTGGGGTT 660
Query 824 CTCGGTTCAGTTCCAACTGTTGATGGAGATATTGTAAAGACGATTTTGCCATTTGTGGAC 883
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 CTAGGTTCAGTTCCAACTGTTGATGGAGATATTGTAAAGAGGATTTTGCCATTTGTGGAC 720
Query 884 TCTGGTCTTCAATCTGGTGTGAAAGGATGTTTAGATCAACAGGCTGGAGCGTTAATGGTT 943
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTGGTCTTCAATCCGGTGTGAAAGGATGTTTAGATCAACAGGCTGGAGCGTTAATGGTT 780
Query 944 GTTGGCATGTTGGCAAACAGAGCTGTGCTAAATACTAATCTTATCAAGCGCTTGATGAGG 1003
||||||||||||||||||||||| |||| |||| ||||||||||||||| || ||||||
Sbjct 781 GTTGGCATGTTGGCAAACAGAGCCATGCTCAATAGTAATCTTATCAAGCGGTTTATGAGG 840
Query 1004 TCCATCATCGACATTGGTCGTGAACATGCCAAGGAATCTTCTGACCCGCATTCGCTTCGA 1063
|||||||| |||| || ||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 841 TCCATCATTGACACTGCTCGTGAACATGCCAAAGAATCTTCTGACCCCCATTCACTTCGG 900
Query 1064 TTGTCACTTATGGCCTTGATCAATTTTGTTCAGCTGCAATCTGTGGACTTGATCCCAAGG 1123
|||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TTGTCATTTATGGCATTGATAAATTTTGTTCAGTTGCAATCTGTGGACTTGATCCCAAGG 960
Query 1124 AAAGCATTGGATCTTTTTAACGAAATAAG 1152
||||||||||||||| | |||||||||||
Sbjct 961 AAAGCATTGGATCTTCTCAACGAAATAAG 989
> Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025
Length=408
Score = 148 bits (80), Expect = 4e-34
Identities = 88/92 (96%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1896 TTAAAATTGCTGTCTCAAGCTTCGGTAATCAAACAGACTCTACTGAGAAAGTTACCTCTG 1955
||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 317 TTAAAATTGTTGTCTCAAGCTTCTGTAATCAAGCAGACTCTACTGAGAAAGTTACCTCTG 376
Query 1956 CAATGTTCCCATTTCTCTTAATTCAGCCGAAG 1987
||||||||||||||||||||||||| ||||||
Sbjct 377 CAATGTTCCCATTTCTCTTAATTCAACCGAAG 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 262216677970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5