BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06560.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477964 jgi|Araly1|477964|fgenesh2_kg.3__665__AT3G06560.1 2529 0.0
> Ahg477964 jgi|Araly1|477964|fgenesh2_kg.3__665__AT3G06560.1
Length=1710
Score = 2529 bits (1369), Expect = 0.0
Identities = 1563/1654 (94%), Gaps = 23/1654 (1%)
Strand=Plus/Plus
Query 8 AAGGCGAAGCGGAGAGACTCCACCAATTTTG---CTTTCTTTTTCTTCAAAGA-TTTTCT 63
||||||||||||||||||| ||||||||||| |||| ||||||| |||||| ||||||
Sbjct 1 AAGGCGAAGCGGAGAGACTACACCAATTTTGCTTCTTTGTTTTTCTGCAAAGATTTTTCT 60
Query 64 CGGGAAAC-A---AAG----TCTGACATTCCTGGCAATGAAAAAGGGAGGTGGGAGAAAT 115
||| |||| | ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CGGAAAACAAGGCAAGAAAATCTGACATTCCTGGAAATGAAAAAGGGAGGTGGGAGAAAT 120
Query 116 AAAGG-TTT-C-CC-TC-A-AGATGACGAAAGCTCGATCTCGCTTCGTCAGCTGATGGTT 169
||||| ||| | || || | || || ||||||||||| |||||||||||||||||||||
Sbjct 121 AAAGGTTTTCCTCCTTCTATGGAAGATGAAAGCTCGATTTCGCTTCGTCAGCTGATGGTT 180
Query 170 AATGAAGGACTCATTCCATCTCTTGAAGATGAGGTGAAACGAAGAGGTGTTATCAATCA- 228
|||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||| |
Sbjct 181 AATGAAGGACTCATTCCATCTCTTGAAGATCAGGAGAAACGAAGAGTTGTCATCAAT-AT 239
Query 229 GCTACGAAAGATAGTTGTGAGATGGGTTAAGAATGTTGCCTGGCAACACCGTCTTCCACA 288
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTACGAAAGATAGTGGTGAGATGGGTTAAGAATGTTGCCTGGCAACACCGTCTTCCACA 299
Query 289 AAATCAGATTGACGCCACCAACGCCACCATTTTACCTTATGGTTCTTATGGTCTTGGGGT 348
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AAATCAGATTGACGCCACCAACGCCACCATTTTACCTTATGGTTCTTATGCTCTTGGGGT 359
Query 349 TTATGGTTCTGAATCAGACATTGACGCTCTCTGCATTGGTCCTTTCTTTGCCTCTATTGC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTATGGTTCTGAATCAGACATTGACGCTCTCTGCATTGGTCCTTTCTTTGCCTCTATTGC 419
Query 409 TGAGGATTTTTTCATCTCCTTGCGTGATATGTTGAAAAGCAGACGAGAAGTTTCCGAGCT 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 TGAGGATTTTTTCATCTCCTTGCGTGATATGTTGAAAAGCAGACGAGAAGTTTCCGAGGT 479
Query 469 TCATTGTGTTAAAGATGCAAAAGTTCCTCTCATCCGCTTTAAGTTTGATGGGATCTTGGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCATTGTGTTAAAGATGCAAAAGTTCCTCTCATCCGCTTTAAGTTTGATGGGATCTTGGT 539
Query 529 TGATCTTCCATATGCTCAGCTTAGAGTATTATCCATTCCAAACAATGTAGATGTGCTTAA 588
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TGATCTCCCATATGCTCAGCTTAGAGTACTATCCATTCCAAACAATGTAGATGTGCTTAA 599
Query 589 TCCTTTCTTTCTGAGGGACATTGATGAGACAAGTTGGAAAATCTTGTCTGGAGTTCGTGC 648
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 600 TCCTTTCTTTCTGAGGGATATTGACGAGACAAGTTGGAAAAGCTTGTCTGGAGTTCGTGC 659
Query 649 AAATAAATGCATACTTCAATTAGTGCCTTCCTTAGAGCTATTCCAATCATTGCTGCGGTG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATAAATGCATACTTCAATTAGTGCCTTCCTTAGAGCTATTCCAATCATTGCTGCGGTG 719
Query 709 TGTCAAATTATGGGCCAAGAGGCGAGGTGTATACGGTAATTTGAATGGATTTCTAGGGGG 768
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGTCAAATTATGGGCAAAGAGGCGAGGTGTATACGGTAATTTGAATGGATTTCTAGGAGG 779
Query 769 AGTTCATATGGCTATTCTTGCTGCATTTGTCTGTGGATACCAACCGAATGCAACATTGAG 828
|||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 780 AGTTCATATGGCTATTCTTGCTGCATTTGTTTGTGGATACGAATCGAATGCAACATTGAG 839
Query 829 TTCCCTTCTGGCAAATTTCTTCTACACATTTGCGCATTGGCAATGGCCTACACCAGTGGT 888
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 840 TTCCCTTCTGGCAAATTTCTTCTACATATTTGCTCATTGGCAATGGCCTACACCGGTGGT 899
Query 889 GTTGCTAGAGGACACTTATCCATCTACTGGGGCTCCTCCAGGCTTAATGCCAATCCAACT 948
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 900 GCTGCTAGAGGACACTTATCCAGCTACTGGGGCTCCTCCAGGCTTAATGCCCATCCAATT 959
Query 949 GCCATGCGGTTCACATCAATACTGCAACTCCACCATAACAAGAAGCACATTTTACAAGAT 1008
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GCCATGTGGTTCACATCAATACTGCAACTCCAACATAACAAGAAGCACATTTTACAAGAT 1019
Query 1009 AGTGGCAGAGTTTCTACTAGGGCATAATTTGACAAAGGATTACTTGAAGCTCAACTTCAG 1068
| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1020 AATGGCAGAGTTTCTACGAGGGCATAATTTGACAAAGGACTACTTGAAGCCCAACTTCAG 1079
Query 1069 TTGGAAGGATTTGTTTGAGCTCTATCCATATGCAAACACATACACGTGGTTCACCAAAAT 1128
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1080 TTGGAAGAATTTGTTTGAGCTCTATCCATACGAAAACACATACACGTGGTTCACCAAAAT 1139
Query 1129 ACATCTCTCGGCTGCTAATCAGGAAGATCTCAGTGATTGGGTTGGTTGGGTTAAGTCACG 1188
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACACCTCTCGGCTGCTAACCAGGAAGATCTCAGTGATTGGGTTGGTTGGGTTAAGTCACG 1199
Query 1189 TTTCCGTTGTCTTCTTATCAAGATAGAGGAAGTCTATGGCATTTGCGATCCAAATCCAAC 1248
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1200 TTTCCGTTGTCTTCTGATCAAGATAGAGGAAGTTTATGGCATTTGCGATCCAAACCCAAC 1259
Query 1249 AGAGTATGTTGAAACCTATACAAAGCAGCCAAACATTGTCTTTTACTGGGGATTACAGCT 1308
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGAGTATGTTGAAACCCATACAAAGCAGCCAAACATTGTCTTTTACTGGGGATTACAGCT 1319
Query 1309 CAGAACCATTAATGTTTCGGACATTGAATCTGTGAAGATAGACTTTCTGAAGAATGTCAA 1368
||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 1320 CAGAACCATAAATGTTTCGGACATTGAATCTGTGGAGACAGAATTTCTGAAGAATGTCAA 1379
Query 1369 CAGTGGAAGCTTCCGGGGAACAGTTGGTAGAATCCAGTTAACCCTTGTCA-AAGCGTCTC 1427
|||||||||||||| |||| |||||||||||||||||||| | |||| | |||||||||
Sbjct 1380 CAGTGGAAGCTTCCAGGGACCAGTTGGTAGAATCCAGTTATCGGTTGT-AGAAGCGTCTC 1438
Query 1428 AACTGCCTAAGAATGGTGAGTGTGGTAGCAACAACAGAAGCAAGAAGGTGACAAAGACTT 1487
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 AACTGCCTAAGAATGGTGAGTGTGCTAGCAACAACAGAAGCAAGAAGGTGACAAAGACTT 1498
Query 1488 GTTGGCGAATCCGGGAAGATAAGCAGTGCAATAATGTACCGGTTTACTCAAAGCATTTGC 1547
||||| ||||||||||| ||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1499 GTTGGAGAATCCGGGAAAATAAGCAATGCAATAATGTACCGGTTTACTCACATCATTTGC 1558
Query 1548 CTGGTTATGTGGTTGGGTATCAAAAGATGGTTAACAGAGAAGCTGATGGTATGGAGG-TT 1606
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||
Sbjct 1559 CTGGTTATGTGGTTGGGTATCAGAAGATGGCTAACAGAGAAGCTGATGGTATGGCGGGTT 1618
Query 1607 AAATGTTAGGTTGTGTTAGTAGTAATGATGGTTT 1640
|||||||||||| |||||||||||||||| ||||
Sbjct 1619 AAATGTTAGGTTATGTTAGTAGTAATGATTGTTT 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5