BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06570.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317521 jgi|Araly1|317521|fgenesh1_pm.C_scaffold_3000537 881 0.0
Ahg952122 jgi|Araly1|952122|scaffold_38400001.1 549 2e-155
Ahg928901 jgi|Araly1|928901|scaffold_301358.1 246 2e-64
Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1 163 3e-39
> Ahg317521 jgi|Araly1|317521|fgenesh1_pm.C_scaffold_3000537
Length=1119
Score = 881 bits (477), Expect = 0.0
Identities = 639/714 (89%), Gaps = 24/714 (3%)
Strand=Plus/Plus
Query 22 ATGTTGTCCCCGCCGGTA-AAGAAGAGGAAGATAGTGGC-GCCGCAATCGCAGTCGGC-A 78
|||| ||||||||||| | ||||||||||||| || ||| || | |||| || || |
Sbjct 1 ATGTCGTCCCCGCCGG-AGAAGAAGAGGAAGACAGCGGCTACCAC-GCCGCAATC-GCAA 57
Query 79 TCGGCCTCGTTTCAGTCGCTTCCCGATGATTTGATATTGAGCATCGTCGCTCGCGTCCCG 138
|| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 58 CCGACCTCGATTCAGTCGCTTCCCGATGATTTGGTATTGAGCATCGTCGCTCGCGTCCCG 117
Query 139 AGATTGTACCATCGGACAGTCTCGCTCGTCTGCAAGAGCTTTCGATCTCTTCTAGTTTCA 198
||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 118 AGATTGTACCATCAGACACTCTCACTCGTCTGCAAGAGCTTTCGATCTCTCCTAGTTTCA 177
Query 199 CCGGAGCTTTACAAGGCCCGATCAGTCTCAGGCCACACCGAGAGCTGTCTCTATCTGTCC 258
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||| |
Sbjct 178 CCGGAGCTTTACGTGGCCCGATCACTCTCGGGCCACATCGAGAGCTGTCTCTATCTGTGC 237
Query 259 ATAGCG-TGTTATCCTGATTATCGCATGTTCACCCTCTGCCGGAAACCTGATCAAACCCT 317
|||| | || || |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 238 ATAG-GATGCGATACTGATTATCGTATGTTCACACTCTGCCGGAAACCTGATCAAACCCT 296
Query 318 AACCACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT-TATTTGGCTCCAGTCC 376
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 297 ---GACCAGT---GAGGAGGAGAAGAAGAAATCAAATGGTTATGT-TTTGGCTCCAGTCC 349
Query 377 CAGATCCAGATTCTCATCCTGTCTACTTCT-CGAGTCTCGTCACGGTTGGTTCTGATATC 435
||| ||||||||||||||||| |||||| | ||||||||||| ||||||| |||||||||
Sbjct 350 CAGCTCCAGATTCTCATCCTGCCTACTT-TACGAGTCTCGTCGCGGTTGGCTCTGATATC 408
Query 436 TACAACATTGCCGGTTCGCACGCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCAAAC 495
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 409 TACAACATTGCCGGTTCGCACGGCTCCTCTCGCGTCTCGATTCTGGATTGCCGGTCAAAC 468
Query 496 ACGTGGCGCGAGGCTCCGAGATTGGGCGTGGAGCTAACCTCAGTTTCTGCTAGCGTCCTT 555
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||
Sbjct 469 ACGTGGCGCGAGGCTCCCAGCTTGGGCGTGGAGCTAACCTCAGTTTCTGCTACCGTCATT 528
Query 556 GATCGAAAGATATTTGTAGTAGGAATGTACGCAGATGATGAAGAATCTGAATC-CAAGAA 614
||||||||||||| ||||||||||| |||| ||||||| | |||||| | | ||| ||
Sbjct 529 GATCGAAAGATATATGTAGTAGGAAGGTACACAGATGA-G--GAATCT-ATTTTCAAAAA 584
Query 615 CGACTTCTTTGAGGTGTTGGACACAGAAACACACACTTGGGATCCTCAGCCCTTCAATTG 674
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 585 -GACTTCTTTGAGGTGTTGGACACAAAAACACAAACTTGGGATCCTCAGCCCTTCAATTG 643
Query 675 CAGCGAGACAAAAGACAAGTTTTTAAACTGCAGAACCGCATTTATTGACGGAAA 728
|||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 644 CAGCGAGACACAAGACAAGTTTTTCTCCTGCAGAACCGCATTTATTGACGGAAA 697
Score = 429 bits (232), Expect = 2e-119
Identities = 356/414 (86%), Gaps = 16/414 (4%)
Strand=Plus/Plus
Query 762 GGTTGCTTACAATTCCAAGGAAAGTAGATGGGAACCGGTTCAAACGAAGATGGCTATGT- 820
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 702 GGTTGCTTACAATTCCAAGGAAAGTAGATGGGACCCGGTTCAAACGAAGTTGGCT-TGTA 760
Query 821 CCATGTTTAATGATTCTTATTGCCAGATACACAATGTTATCTACTTAG--CTTTTGACGG 878
||||| || ||||| ||||||||||| |||||||| || || | || |||||||
Sbjct 761 TAATGTTGAAAGATTCGCATTGCCAGATAGGGAATGTTATGTA-TT-GTTCTGTTGACGG 818
Query 879 AAGGATCAGATGGTATGACGA-TGCGCTAAACTGTTGGGGAGACGTCCAGGGTTTGCTAG 937
|||||||||||||| |||| | || | ||| | ||||| || ||| ||||||||||||
Sbjct 819 AAGGATCAGATGGTGTGAC-ACTGAGGTAAGCAGTTGGAGATTGGTCAAGGGTTTGCTAG 877
Query 938 AACTGGGTAACATCCCTCATGGTCCTTCTTGTGTTAGATTGGCTGATTATCGTGGAAACA 997
|||| |||| | ||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 878 AACTAGGTAGCTTCCCTTGTGGTCCTTTTTGTGTTAAATTGGCTGATTATCGTGGAAACA 937
Query 998 TTGCGGTTTTCTGGTTC-AGATATTTACCTGATAATGATGACTACAAATGGAAGATGATT 1056
| |||||||||||| || ||| |||| |||| ||||| || |||| |||||||||||
Sbjct 938 TAGCGGTTTTCTGGGTCAAGA-ATTTTCCTG---ATGATAAC--CAAA-GGAAGATGATT 990
Query 1057 TGGTGTGCCGAGATTGCGCTTGAAAGACGCACTAGTTGGGAGATTTGGGGGAAAGTTTTG 1116
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 991 TTGTGTGCCGAGATTGCGCTTGAAAGACGCACTAGTTTTGAGATTTGGGGGAAAGTTTTG 1050
Query 1117 TGGTTTGATCCTGTTCTTACTGTCCCTGCAGATTATGAGTTTGTCAAAGCTCTT 1170
|||||||||| |||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1051 TGGTTTGATCATGTTCTTACTGTCCCTACAGATTATGAGTTAATCAAGGCTCTT 1104
> Ahg952122 jgi|Araly1|952122|scaffold_38400001.1
Length=736
Score = 549 bits (297), Expect = 2e-155
Identities = 461/537 (86%), Gaps = 24/537 (4%)
Strand=Plus/Plus
Query 663 GCCCTTCAATTGCAGCGAGACAAAAGACAAGTTTTTAAACTGCAGAACCGCATTTATTGA 722
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 194 GCCCTTCAATTGCAGCGAGACACAAGACAAGTTTTTCTCCTGCAGAACCGCATTTATTGA 253
Query 723 CGGAAAGTTCCTCGTGAAACC-TTGGATTCATAGAGGGGTGGTTGCTTACAATTCCAAGG 781
|| |||||||||||||| || || | | |||||||||| ||||||||||||||||||
Sbjct 254 CGAAAAGTTCCTCGTGATGCCTTTTG-CCCGTAGAGGGGTGATTGCTTACAATTCCAAGG 312
Query 782 AAAGTAGATGGGAACCGGTTCAAACGAAGATGGCTATGTCCA-TGTTTAATGATTCTTAT 840
||||||||||||| || |||||||||||||||||| ||| | |||| || ||||| ||
Sbjct 313 AAAGTAGATGGGACCCAGTTCAAACGAAGATGGCT-TGTATAATGTTGAAAGATTCGCAT 371
Query 841 TGCCAGATACACAATGTTATCTACTTAGCT-T-TTGACGGAAGGATCAGATGGTATGACG 898
||||||||| |||||||| || || | | | ||||||||||||||||||||||||||
Sbjct 372 TGCCAGATAGGGAATGTTATGTA-TT-GTTCTGTTGACGGAAGGATCAGATGGTATGAC- 428
Query 899 A-TGC-GCTAAACTGTTGGGGAGACGTCCAGGGTTTGCTAGAACTGGGTAACATCCCTCA 956
| | | | ||| | ||||| || ||| |||||||||||||||| |||| | |||||
Sbjct 429 ACT-CAGGTAAGCAGTTGGAGATTGGTCAAGGGTTTGCTAGAACTAGGTAGCTTCCCTTG 487
Query 957 TGGTCCTTCTTGTGTTAGATTGGCTGATTATCGTGGAAACATT-GCGGTTTTCTGGTTCA 1015
|||||||| |||||||| ||||||||||| |||||||||| || || ||||||||| |||
Sbjct 488 TGGTCCTTTTTGTGTTAAATTGGCTGATTGTCGTGGAAAC-TTAGCCGTTTTCTGGGTCA 546
Query 1016 -GA-TATTTACCTGAT-AA--TGATGACTACAAATGGAAGATGATTTGGTGTGCCGAGAT 1070
|| | ||| |||||| || ||||||| |||| |||||||||||| |||||| |||||
Sbjct 547 AGAGT-TTT-CCTGATGAAGGTGATGAC--CAAA-GGAAGATGATTTTGTGTGCTGAGAT 601
Query 1071 TGCGCTTGAAAGACGCACTAGTTGGGAGATTTGGGGGAAAGTTTTGTGGTTTGATCCTGT 1130
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 602 TGCGCTTGAAAGACGCACTAGTTTTGAGATTTGGGGGAAAGTTTTGTGGTTTGATCATGT 661
Query 1131 TCTTACTGTCCCTGCAGATTATGAGTTTGTCAAAGCTCTTGCTGCTACTGTTTGATC 1187
|||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 662 TCTTACTGTCCCTGCAGATTATCAGTTAATCAAGGCTCTTGCTGCTACTGTTTGATC 718
> Ahg928901 jgi|Araly1|928901|scaffold_301358.1
Length=1293
Score = 246 bits (133), Expect = 2e-64
Identities = 391/507 (77%), Gaps = 51/507 (10%)
Strand=Plus/Plus
Query 89 TTCAGTCGCTTCCCGATGATTTGATATTGAGCATCGTCGCTCGCGTCCCGAGATTGTACC 148
||| ||| ||||||||||||||| |||||| ||||||||| |||||||| ||||||||||
Sbjct 183 TTCCGTCACTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGTACC 242
Query 149 ATCGGACAGTCTCGCTCGTCTGCAAGAGCTTTCGATCTCTTCTAGTTTCACCGGAGCTTT 208
||| ||| | || ||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 243 ATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGCTAGCTTCACCGGAGCTTT 302
Query 209 ACAAGGCCCGATCAGTCTC--AGGCCACACCGAGAGCTGTCTCTATCTGTCCAT--AGCG 264
|||||| | | || |||| ||| | |||||||| ||||||||| ||| ||| | |
Sbjct 303 ACAAGGTCAGGTC--TCTCATAGGAAAGACCGAGAGTTGTCTCTATGTGTGCATCAATTG 360
Query 265 TGTTATCCTG-A--TTATCGCAT-GTTCACCCTCTGCCGGAAACCTGATCAAACCCTAAC 320
||| ||||| | || ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 361 -GTT-TCCTGAAGGTTTTCG-TTGGTTCACCCTCTGCCGGAAACCTGATCAAACCCTAAC 417
Query 321 CACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT-TATTTGGCTCCAGTCCCA- 378
|| | ||| ||| | ||||||| | |||| ||| ||| | ||||||| ||||||||
Sbjct 418 CA--A-TGATGAG-A--AGAAGAA-A--TCAAGTGGGTATGT-TTTGGCTTCAGTCCCAA 467
Query 379 -GATCCAGATTCTCATCCTGTCT-ACTTCT-CGAGTCTCGTCACGGTTGGTTCTGATATC 435
|| ||| || ||| || || | | || | ||||| | || || ||||||||||||||
Sbjct 468 TGA-CCA-ATACTCCTCATG-CGGATTT-TGCGAGTGTGGTGGCGCTTGGTTCTGATATC 523
Query 436 TACAACATTGCCGG-------T--TC--GC-ACGCCTCCTC-TA-A-CGTCTCGATTCTG 480
|| ||||||| || | || | | |||||||| | | ||||| ||||||
Sbjct 524 TATAACATTGGCGTACCACAATCCTCTAGGGAAGCCTCCTCCTCTAGCGTCTTTATTCTG 583
Query 481 GATTGCCGGTCAAACACGTGGCGCGAGGCTCCGAGATTGGGCG-TGGAGCTAACCT-CAG 538
||||||||||| |||| |||||| ||||||| || ||| || |||||||| | | |
Sbjct 584 GATTGCCGGTCTCACACTTGGCGCCAGGCTCCAAGCTTGC-CGGTGGAGCTATT-TACTG 641
Query 539 TTTCTGCTAGCGTCCTTGATCGAAAGA 565
| |||| | || || ||||| ||||||
Sbjct 642 TCTCTGTTGGCCTCATTGATGGAAAGA 668
> Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1
Length=921
Score = 163 bits (88), Expect = 3e-39
Identities = 217/274 (79%), Gaps = 30/274 (11%)
Strand=Plus/Plus
Query 244 TGTCTCTATCTGTCCATAGC-GTG-TTATCCTGATTATCGCAT-GTTCACCCTCTGCCGG 300
||||||||| ||| | || | ||| || ||||| ||||||| | |||||||||||| |||
Sbjct 1 TGTCTCTATGTGTGCTTA-CGGTGCTT-TCCTGGTTATCGC-TGGTTCACCCTCTGTCGG 57
Query 301 AAACCTGATCAAACCCTAACCACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT 360
|| ||||||||||||||||||| | ||| | | |||||||| ||| ||| |||
Sbjct 58 AAGCCTGATCAAACCCTAACCA--A-TGA-CACCA--CTAAGAAGAAGCCAAGTGGGTAT 111
Query 361 -TATTTGGCTCCAGTCCCAGA-TCC-AGATTCTCAT---CCTGTCTACTTCTCGAGTCTC 414
| |||||| |||||||| || ||| || || |||| || | | |||| |||||||||
Sbjct 112 GT-TTTGGCACCAGTCCC-GATTCCTAG-TTTTCATAAACC-G-C-ACTTTTCGAGTCTC 165
Query 415 GTCACGGTTGGTTCTGATATCTACAACATTGCCGGTTCGCACGCCTCCTCTAACGTCTCG 474
|| ||||||||||||||||||||||| | || || | |||||||||||||||||
Sbjct 166 GTGGTGGTTGGTTCTGATATCTACAACA-T-CC---ACGGGC-CCTCCTCTAACGTCTCG 219
Query 475 ATTCTGGATTGCCGGTCAAACACGTGGCGCGAGG 508
||||||||||||||||| ||||||||||| |||
Sbjct 220 ATTCTGGATTGCCGGTCTCACACGTGGCGCAAGG 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5