BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06590.1
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477966 jgi|Araly1|477966|fgenesh2_kg.3__667__AT3G06590.1 1007 0.0
> Ahg477966 jgi|Araly1|477966|fgenesh2_kg.3__667__AT3G06590.1
Length=764
Score = 1007 bits (545), Expect = 0.0
Identities = 706/781 (90%), Gaps = 22/781 (3%)
Strand=Plus/Plus
Query 79 GAGATCAGAGCCAATTATTTGGTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGACG 138
||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATCAGAACCAATTCTCTGTTTATGGCGTCTCTGATCTCAGATATTGAACCGCCGAC- 59
Query 139 AGTACTACTTCAGATCTCGTTCGGAGAAAGAAGAGATCCTCTGCT-TCATCCGCCGCATC 197
| | |||||||||||||||| |||||||||||||||| | || |||||||||||
Sbjct 60 -G----A---CAGATCTCGTTCGGAGGAAGAAGAGATCCTCTG-TCTCCTCCGCCGCATC 110
Query 198 GTCTCGTTCAAGCGCATCTTCCGTCTCCGGTGAGATTCACGCGCGATGGCGATCGGAGAA 257
|||| || ||| |||| |||||||||| |||||| |||||||||||| ||||||||||
Sbjct 111 GTCTAGTACAACCGCAGGTTCCGTCTCCAGTGAGAGCCACGCGCGATGGAGATCGGAGAA 170
Query 258 GCAACAACGGATCTACTCAGCCAAACTG-TTCCAAGCGCTCCAACAAGTCCGCCTCAACT 316
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 171 GCAACAACGGATCTACTCAGCCAAACTGATT-CAGGCGCTCCAACAAGTCCGCCTCAACT 229
Query 317 CTTCCGCCTCAACATCATCATCTCCAACGGCTCAGAAACGAGG-AAAGGCCGTCCGTGAA 375
|||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 230 CTTCCGCCGCGACATCATCATCTCCAACGGCTCAGAAACGAGGCAAA-GCCGTCCGTGAA 288
Query 376 GCCGCCGATCGAGCTCTTGCCGTTTCCGCTCGGGGAAGAACACTCTGGAGCAGAGCGATC 435
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 289 GCCGCCGATCGAGCTCTCGCCGTTTCCGCTCGTGGAAGAACGCTCTGGAGCAGAGCGATC 348
Query 436 TTAGCTAATCGGATCAAACTGAAATTTCGTAAACAGAGACGTCCTCGAGCTACGATGGCG 495
||||||||||||||||||||||||| |||||||||| ||| || || |||||| | |
Sbjct 349 CTAGCTAATCGGATCAAACTGAAATTCCGTAAACAGAAACGGCCGAGAACTACGACGAAG 408
Query 496 ATTCCGGCCATGACTACGGTGGTTAGTAGCAGCAGCAACAGATCGAGAAAACGGAGAGTG 555
|||||| ||||||| ||||||| | | | ||||||||||||||||| ||||| ||||||
Sbjct 409 ATTCCGTCCATGACCACGGTGG-T-G-AATAGCAGCAACAGATCGAGGAAACGAAGAGTG 465
Query 556 TCGGTGTTGAGATTGAATAAGAAGAGTATACCGGATGTTAACCGGAAAGTACGTGTTCTA 615
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 466 TCGGTGTTGAGATTGAATAAGAAGAATATACCGGATGTTAACCGGAAAGTACGTGTACTA 525
Query 616 GGCCGGTTAGTTCCCGGTTGCGGTAAACAATCCGTACCGGTGATTCTAGAAGAAGCAACT 675
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 526 GGCCGGTTAGTTCCCGGTTGTGGGAAACAATCCGTACCGGTGATTTTAGAAGAAGCAACT 585
Query 676 GATTATATTCAGGCTCTGGAGATGCAAGTGAGAGCCATGAACTCTTTAGTTCAGCTTCTC 735
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 586 GATTATATTCAGGCTCTGGAGATGCAGGTCAGAGCCATGAACTCTTTAGTTCAGCTTCTC 645
Query 736 TCCTCCTACGGCTCAGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTTAATTCT 795
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 646 TCCTCCTACGGCTCCGCTCCTCCACCGATTTGATGAGGTTAAAATCGTCTTTTAAATTCT 705
Query 796 ACCATCTCTCGATCTTTC-A-CAGCTTATGTGTATATAGAAGATTCGGTTTGATTATAAT 853
||||| || |||| || | | || |||||||||||||||||||||||||| ||||||
Sbjct 706 CCCATCA-TC-ATCTCTCTATCTTCTAATGTGTATATAGAAGATTCGGTTTGAGTATAAT 763
Query 854 C 854
|
Sbjct 764 C 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36864860739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5