BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06600.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928307 jgi|Araly1|928307|scaffold_300764.1 918 0.0
> Ahg928307 jgi|Araly1|928307|scaffold_300764.1
Length=625
Score = 918 bits (497), Expect = 0.0
Identities = 585/627 (93%), Gaps = 7/627 (1%)
Strand=Plus/Plus
Query 6 TTTGAAAACATTGGAGAGAGATGAAGGAAATTCAAATTCCCAGGAAAAGCTTCGCGCGCT 65
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTGAAAACATTGGAGAGAGATGAAGGAAATTCAAATTCCCAGGAAAAACTTCGCGCGCT 60
Query 66 CATCAGAACTCGGAGCTAAGAGACTCAAGGATCCTGAGATGAAGAATCGGAAGGTTACGA 125
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 61 CATCAGATCTCGGAGCTAAGAGACTCAAGGACCCTGAGATGAAGAATCGAAAGATTACGA 120
Query 126 CGGAGAAGAGACAGATCGCAACATTTTCCGACGTATCTTTTGAAAGCACGAAGGATCCGA 185
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 121 CGGAGAAGAGACAGAGCGCAACATTTTCCGATGTATCTTTTGAAAGCACGAAGGATTCAA 180
Query 186 TGGATTTTAGTCCGATCTCTCAGATTTCTGGTGCGATCTCTGATTCCGAGGCTGAGAGTG 245
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TGGATTTTACTCCGATCTCTCAGATTTCTGGTCCGATCTCTGATTCCGAGGCTGAGAGTA 240
Query 246 TTA-T-T-CAAGGATCGAGCCTAGACTTAATGTCAAC-CCCAGAGATTTGTCTTCCGGCT 301
||| | | ||||||||||||| ||||||| ||||||| || | | ||||||||||||||
Sbjct 241 TTATTATGCAAGGATCGAGCCCAGACTTATTGTCAACGCCTA-AAATTTGTCTTCCGGCA 299
Query 302 GATGATTCTCCAGTTTCAACCATTACTAGTGTGGAGGCTCGTATTGACACGTCTTCTACT 361
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GATGATTCTCCAGTTTCAACGATTACTAGTGTGGAGGCTCGTATTGACACTTCTTCTACT 359
Query 362 GATCGGATCCAGTCGATTGTGGACTTGCCCGCTTCTGTGCAATCCTTGCGTGGGGAGATC 421
|||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||
Sbjct 360 GATCGGATCCAGTCGATTGTGGACTTACCTGCTTCTGTGCAGTCCTTGCGTGCGGAGATA 419
Query 422 AATGAGCTGAAAAAACTGATCTGTTCAGTTGACAATTCTGCAGAAATTAACTGGGTCGAT 481
|||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 420 AATGAGCTAAAAAAACTGATCTGTTCGGCTGAAAATTCTGCAGAAATTAACTGGGTCGAC 479
Query 482 AGAGTTGTTACTGTGAAATTCCGCATTGTGCTTTTGAGTTTCATTCTTTGGGCTATCTTA 541
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 GGAGTTGTTACTATGAAATTCCGCATTGTGCTTTTGAGTTTCATCCTTTGGGCTATCTTA 539
Query 542 GCTGCGATTGTGGTCTTCTTCAGCTCAGGAGAGGAACGT-GCTTACCGTGGACCACTTCC 600
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 540 GCTGCGATTGTGGTCTTCTTCAGCTCAGGAGAGGAA-GTTGCTTACCGTGGACTACTTCC 598
Query 601 AACATGATTCTTCAAGGTAATTCACTT 627
||||||||||| |||||||||| ||||
Sbjct 599 AACATGATTCTGCAAGGTAATTTACTT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5