BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06660.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477982 jgi|Araly1|477982|fgenesh2_kg.3__683__AT3G06660.1 1714 0.0
Ahg928322 jgi|Araly1|928322|scaffold_300779.1 62.1 1e-08
> Ahg477982 jgi|Araly1|477982|fgenesh2_kg.3__683__AT3G06660.1
Length=1530
Score = 1714 bits (928), Expect = 0.0
Identities = 1057/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 522 ACCAATAGTTTATGTGGGTCTGTGAGTGAGAACAAACTGAAAGTGAAGCTTAAGCTTGGT 581
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 ACCAATAGTCTCTGTGGGTCTGTGAGTGAGAACAAACTGAAACTGAAGCTTAAGCTTGGT 474
Query 582 GCTGGTGTTACCCGTACGTTGCAAACCAACTCTGAGGCGGGTAC-TTATACCAAAGCTTT 640
| ||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 475 GGTGGTGTTACTCGTACGTTGCAAACCAACTCTGAGGCGGGT-CTTTATTCCAAAGCTTT 533
Query 641 GGATAATGGACAAAAACCATTTCAAAGTAAGGTAAAAGGCAATGGTCATGTTCAGAAAAC 700
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 534 GGATAATGGACAAAAGCCATTTCAAAATAAGGTAAAAGGCAATAGTCATGTTCAGAAAAC 593
Query 701 ACTGTTTCTAGGAGATATACATCAATCTAGAGGATATCCGTCTAAGACTGAGAA-TG-GT 758
|||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | |
Sbjct 594 ACTGTTTCTAGGAGATATCCATCAATCTAGAGGATATCCGTCTGAGACTGGGAACCGAAT 653
Query 759 GCGTCCATGTCCGAGAAGAGCAAACGAGGTCTTAAGAAACGTGTATTGGATCCAGAGCCA 818
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 -C-TCCATGTCTGAGAAGAGCAAACGAGGTCTTAAGAAACGTGTATTGGATCCAGAACCA 711
Query 819 GACA--G-TGATGATGGAGATGAGGAAATCAGATACCTCGTAAAGTTAAAGTCTAAAAGG 875
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GACAGTGATGATGATGGAGATGAGGAAATCAGATACCTCGTAAAGTTAAAGTCTAAAAGG 771
Query 876 GTCGGGGTCTCTCATGAAGGTAAAGAGAGTGAAGGAGGCAGAAGGATACACAGCAGTGGT 935
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 772 GTCAGGGACTCTCATGAAGGTAAAGAGAGTGAAGGAGGCACAAGGATACACAGCAATGGT 831
Query 936 CATGACATGGAAGACGGAAAACATCTCTCATCAGACAAACTTGCTGTGTCCGGAAGGAAA 995
||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 832 CATGACATGGAAGACACAAAACATCCCTCATCAGACAAACTTGCTGTATCCGGAAGGAAA 891
Query 996 AAGCCGGTGATGGGAATGGTTGATCCGCTCCCGGCAGGAGAAACAAGCGGACAAATTCCT 1055
|||||| ||||||||||||||||||||| || ||||||| |||||||| |||||||||
Sbjct 892 AAGCCGAAGATGGGAATGGTTGATCCGCTTCCAGCAGGAGCGACAAGCGGGCAAATTCCT 951
Query 1056 ACTACACGTACTCGGGCTCTCCAATCTGGAAAGGATCCACATTCTGTCATCAGGTCGAGT 1115
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 952 ACTACACGTACTCGGGCTCTCCAATCTGGAACGGATCCACATTCTGTCATTGGGTCGGGG 1011
Query 1116 TCTCTTGAGTTCCCTGATGGCTTACCTTGCCCCTCATCTAAAAGACCAAAACAGAAGCTT 1175
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CCTCTTGAATTCCCTGATGGCTTACCTTGCCCCTCATCTAAAAGACCAAAACAGAAGCTT 1071
Query 1176 TCTGAGGTAGAGCAACAATCCAAGAAGGCCGAAGCTGCACAGAGACGGCGAATGCAGTGT 1235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1072 TCTGAGGTAGAGCAACAATCCAAGAAGGCCGAAGCTGCACAGAGACGGCGAATGCAGTCT 1131
Query 1236 GAGAAGGCTGCCCAAGAAGCCGAGGCTGAAGCTATCAGGAAAATACTCGGACAAGATTCT 1295
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1132 GAGAAGGCTGCCCAAGAAGCCGAGGCTGAAGCTATCAGGAAAATACTTGGGCAAGATTCT 1191
Query 1296 GGTAGAAAGAAAAGAGAGGAGAAGATaaaaaaaCAACAGGAAGAACGAGCTCAGGAGAGA 1355
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 GGGAGAAAGAAAAAAGAGGAGAAGATCAAAAAACAACAGGAAGAACGAGCTCAGGAGAGA 1251
Query 1356 GCTGCAAGATCAAGCACACTCGCATCAAACACTATCAGATTGGTTATTGGTCCAAGTGGA 1415
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 GCTGCAAGATCAAGCACACTCGCATCAAACACTATCAGATTGGTGATTGGTCCAAGTGGA 1311
Query 1416 ACAACTATGACATTTTCTGAAGACATTGGTCTTCCAGATATCTTCAAGCCAGTCACGTAC 1475
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1312 ACAACTATGACATTTTCTGAAGACATTGGTCTTCCGGATATCTTCAAGCCAATCACGTAT 1371
Query 1476 AGTTATCCTCCTCCGCGAGAGAAATGTGTGGGACCAAATTGCGAGAAAGCGTACAAGTAC 1535
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1372 AGTTATCCTCCTCCACGAGAGAAATGTGTGGGACCAAATTGCGAGAAAGCTTACAAGTAC 1431
Query 1536 AGGGATTCAAAGTCGAAGCTGCCATTATGTAGTCTCGGATGTTACAACGCCATTCAAGAG 1595
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1432 AGGGATTCAAAGTCGAAGCTGCCATTATGCAGTCTCGGATGTTACAAGGCCATTCAAGAG 1491
Query 1596 AAGATGGAACAAGCACTGATTCATTGCTAATTGCTCAAC 1634
||||||||||||||||||||||||||||||||||| |||
Sbjct 1492 AAGATGGAACAAGCACTGATTCATTGCTAATTGCTTAAC 1530
Score = 263 bits (142), Expect = 3e-69
Identities = 308/381 (81%), Gaps = 39/381 (10%)
Strand=Plus/Plus
Query 112 cttcttcttcttcttctcaactccattatctaattctagggtttttctctccttcttctt 171
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| || |
Sbjct 67 CTTCTTCTTCTTCTTCTCAACTCCATTATCTAATTCTAGGGTTTTT-T-T--TTC-TC-T 120
Query 172 cgcacttctctttctctctcccgccgcttgtttcttctttccctcGAAACACTGGTGTTA 231
| | | || | ||| | || ||| ||| |||||||||||||| ||||||||||
Sbjct 121 --C-C-T-TC--T-TCT-T--CG-CGC----TTC-TCTTTCCCTCGAAAAACTGGTGTTA 163
Query 232 CTGTGAGATTCTCGTTTGAATTTAGGGGATTTCTTAACGAATTCACTGAGAAGCACTAAT 291
||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| | |
Sbjct 164 CTGTGAGTTTCTCGTTTGAATTTTGGGGATTTCTTAAAGAATTCACTGAGAAG-AAGGCT 222
Query 292 TGCGAAGGT-GTTGTTAGAGGTATTTT-G--CTGCATCTACGCT-TGTCCTGATAATGGA 346
| | |||| | | ||| || |||| | || || | | || | | | ||||||||
Sbjct 223 TTAG-AGGTGGGT-TTA-TCGTTTTTTAGTTATGGATAT-CACTATTTTATTATAATGGA 278
Query 347 -GGACTCTGGAGGTTCTGCTTCTACTTTAGCTGGCTTTACGGGTAGGAGAAGGAGAAGCG 405
||| | || || |||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 279 GGGA-TGTGAAGCTTCTGCTTCTTCTTTAGCTGGCTTTACCGGTAGGAGAAGGAGAAGCG 337
Query 406 CTCTGCCTCGTCGACCCCGCGATATTAAA-GGGAGCTTGCATAGTTTCAAGTTTCT-GCC 463
||||||||||||||||||||| ||| ||| |||||| |||||||||||||| || |||
Sbjct 338 CTCTGCCTCGTCGACCCCGCGTTAT-AAATGGGAGCGCCCATAGTTTCAAGTT-CTTGCC 395
Query 464 ACCCTCAACGCAGACAAACAC 484
||| ||||| ||| |||||||
Sbjct 396 ACCTTCAACACAGGCAAACAC 416
Score = 110 bits (59), Expect = 5e-23
Identities = 81/90 (90%), Gaps = 8/90 (9%)
Strand=Plus/Plus
Query 1 GGAGGAGATAAAGATTTTGGG-ACATCTCTTCCACATTTACCCTTCACTTAAAGCCAATC 59
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGGAGATAAAGATTTTGGGCACCTCTCTTCCACATTTACCCTTCACTTAAAGCCAATC 60
Query 60 CTCTCTCGAGAGActtcttcttcttcttct 89
|||||||||||||||||||||||
Sbjct 61 -------GAGAGACTTCTTCTTCTTCTTCT 83
> Ahg928322 jgi|Araly1|928322|scaffold_300779.1
Length=690
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 25 TCTCTTCCACATTTACCCTTCACTTAAAGCCAA 57
|||||||||||||||||||||||||||||||||
Sbjct 33 TCTCTTCCACATTTACCCTTCACTTAAAGCCAA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5