BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06680.1
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477985 jgi|Araly1|477985|fgenesh2_kg.3__686__AT3G06680.2 448 2e-125
Ahg933254 jgi|Araly1|933254|scaffold_401242.1 276 1e-73
Ahg897572 jgi|Araly1|897572|Al_scaffold_0005_1538 250 6e-66
> Ahg477985 jgi|Araly1|477985|fgenesh2_kg.3__686__AT3G06680.2
Length=428
Score = 448 bits (242), Expect = 2e-125
Identities = 317/351 (90%), Gaps = 13/351 (4%)
Strand=Plus/Plus
Query 43 AGTTGTGTTGTGCCGTTGTTACAGAAATGGCGAAA-TCGAAGAATCACACGGCGCACAAT 101
||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||
Sbjct 87 AGTTGTGTTGTGCCGTTGTTACAGAGATGGC-AAAGTCAAAGAATCACACGGCGCACAAT 145
Query 102 CAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCA 161
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 146 CAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCA 205
Query 162 ACCAGAGGAATGGATCCTAAATTCCTAAGAAACCAGAGGTATGCAAGGAAGCACAACGTC 221
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||
Sbjct 206 ACCAGAGGAATGGATCCTAAGTTCCTAAGGAACCAGAGGTACGCAAGGAAGCACAACATC 265
Query 222 AAGAGTGGCGAGAATGCTGGTG-TCGAAGAGTAGATCTTTTGATCGTCTGATTGACAGTT 280
|||||||||||||||||| | | | ||||||||||||||||||||| || || | || ||
Sbjct 266 AAGAGTGGCGAGAATGCTAGCGCT-GAAGAGTAGATCTTTTGATCGCCTCATAGGCATTT 324
Query 281 TAAGttttttttATGAATTTCACTTGT-TTAGACAAAGGAACCAATGTTCTACAATCAGG 339
|||| |||||| ||||||||||||| | |||||||||| ||||||||| |||||||||||
Sbjct 325 TAAGGTTTTTT-ATGAATTTCACTT-TCTTAGACAAAG-AACCAATGTACTACAATCAGG 381
Query 340 GATTATGTCTATC-CAGATTCTCTTATATATTTTGCATGTTACTTGATTTG 389
|||| ||||||| || |||||||||| | || ||| |||||||||||||
Sbjct 382 GATTGTGTCTATTTCAAATTCTCTTAT-T-TT--GCAAGTTACTTGATTTG 428
> Ahg933254 jgi|Araly1|933254|scaffold_401242.1
Length=227
Score = 276 bits (149), Expect = 1e-73
Identities = 196/218 (90%), Gaps = 5/218 (2%)
Strand=Plus/Plus
Query 50 TTGTGCCGTTGTTACAGA-AATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTG 108
||||| |||||||||||| |||||| || |||||||||||||||||||| || |||||||
Sbjct 1 TTGTGTCGTTGTTACAGAGAATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCTG 60
Query 109 CCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAG 168
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 CCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAG 120
Query 169 GAATGGATCCTAAATTCCTAAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAAGAGTG 228
||||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||| |
Sbjct 121 GAATGGATCCTAAGTTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGCG 180
Query 229 GCGAGAATGCTGGTG-TCGAAGAGTA-GATCTTTTGAT 264
||||||||||| | | | ||||| || | | |||||||
Sbjct 181 GCGAGAATGCTAGCGCT-GAAGAATAAG-TATTTTGAT 216
> Ahg897572 jgi|Araly1|897572|Al_scaffold_0005_1538
Length=186
Score = 250 bits (135), Expect = 6e-66
Identities = 161/173 (93%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 69 ATGGCGAAA-TCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG 127
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGC-AAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG 59
Query 128 AATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAATGGATCCTAAATTCCT 187
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 60 AATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCT 119
Query 188 AAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAA-GAGTGGCGAGAATGCT 239
|| ||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct 120 GAGGAACCAGAGGTACGCAAGGAAGCACAACATCAACG-GTGGCGAGAATGCT 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14422812642
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5