BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06700.1
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933254 jgi|Araly1|933254|scaffold_401242.1 309 1e-83
Ahg477985 jgi|Araly1|477985|fgenesh2_kg.3__686__AT3G06680.2 291 4e-78
Ahg897572 jgi|Araly1|897572|Al_scaffold_0005_1538 248 2e-65
> Ahg933254 jgi|Araly1|933254|scaffold_401242.1
Length=227
Score = 309 bits (167), Expect = 1e-83
Identities = 195/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 101 CAGAG-ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAG 159
||||| |||||||||||||||||||||||||||||||||||||| || || || || |||
Sbjct 15 CAGAGAATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCTGCCAAGGCGCATAAG 74
Query 160 AACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAG 219
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 75 AACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAG 134
Query 220 TTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACGTCAAG-GCCGGCGAGAATGCTAG 278
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 135 TTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGC-GGCGAGAATGCTAG 193
Query 279 CGCTGAAGAATAAGTGTTTTGATTATCT 306
||||||||||||||| |||||||| |||
Sbjct 194 CGCTGAAGAATAAGTATTTTGATTCTCT 221
> Ahg477985 jgi|Araly1|477985|fgenesh2_kg.3__686__AT3G06680.2
Length=428
Score = 291 bits (157), Expect = 4e-78
Identities = 238/275 (87%), Gaps = 13/275 (5%)
Strand=Plus/Plus
Query 101 CAGAGATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGA 160
|||||||||| ||||| ||||||||||||||||| || ||||| || || || || ||||
Sbjct 108 CAGAGATGGCAAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGA 167
Query 161 ACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGT 220
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 168 ACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGT 227
Query 221 TCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACGTCAAG-GCCGGCGAGAATGCTAGC 279
|||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 228 TCCTAAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGT-GGCGAGAATGCTAGC 286
Query 280 GCTGAAGAATA-AGTGTTTTGATTATCTG-TGAGACATTTTGAAGtttttttttAATGAA 337
|||||||| || | | ||||||| || | || |||||| ||| |||||| | ||||
Sbjct 287 GCTGAAGAGTAGA-TCTTTTGATCGCCTCAT-AGGCATTTT-AAGGTTTTTT--A-TGAA 340
Query 338 TTTAAGACTTTCTTAGACAAAGGAACCAATTTACT 372
||| | ||||||||||||||| ||||||| ||||
Sbjct 341 TTTCA--CTTTCTTAGACAAAG-AACCAATGTACT 372
> Ahg897572 jgi|Araly1|897572|Al_scaffold_0005_1538
Length=186
Score = 248 bits (134), Expect = 2e-65
Identities = 165/180 (92%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 106 ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGA 165
||||| ||||| ||||||||||||||||| || ||||| || || || || |||||||||
Sbjct 1 ATGGCAAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGA 60
Query 166 ATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGTTCCTG 225
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCTG 120
Query 226 AGGAACCAGAGGTACGCAAGGAAGCACAACGTCAA-GGCCGGCGAGAATGCTAGCGCTGA 284
|||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 121 AGGAACCAGAGGTACGCAAGGAAGCACAACATCAACGGT-GGCGAGAATGCTAGCGCTGA 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16750303571
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5